Shewanella sp. JNE2: MZ182_01705
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Entry
MZ182_01705 CDS
T08546
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shej
Shewanella sp. JNE2
Pathway
shej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MZ182_01705 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shej03019
]
MZ182_01705 (recQ)
03400 DNA repair and recombination proteins [BR:
shej03400
]
MZ182_01705 (recQ)
Enzymes [BR:
shej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MZ182_01705 (recQ)
Messenger RNA biogenesis [BR:
shej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MZ182_01705 (recQ)
DNA repair and recombination proteins [BR:
shej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MZ182_01705 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CpeT
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UPO31595
LinkDB
All DBs
Position
351898..353721
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AA seq
607 aa
AA seq
DB search
MEKLVLDTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLP
ALMMNGITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLY
VSPERLLTADFIERMQSLQLAMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPYVPMMAL
TATADQATRQSICERLGIEPYRLLSSFDRPNIRYTVAEKLNAANQLRHFLLQQNGSSGII
YCSSRRRVDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDAQKVLS
CIYRLGQRFGINHLIEVLRGSKGAPIVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDVTRGSSITLNPSARPVLKGEVALMLAEPRIQLTTTKRKASQSKAPLNYDRKLFARL
KLLRRTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDDFLDEI
AAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctcgtactcgacacgcatgatgatccgctctcgcaacgcttagcacaggtg
tttggttaccgtgactttagggacggtcagcgggaggtgatagaacgtgtctgcggcggg
caagattgcttagtgatcatgccaacgggcggcggtaagagcctgtgttatcagttaccc
gctttgatgatgaatggcatcactattgtcgtctccccattgatttctttgatgaaagat
caagtcgatagcttattgcaaaccggtgttgctgcggcttatctgaattcttctttgccg
cgagagcagagtgccgaggtattaaggcagctacgccacggtgagttaaaactactttat
gtgtcacctgagcgcttattaaccgctgattttattgagcgtatgcagtcgctgcagctg
gcgatgtttgccatcgacgaggcgcactgtattagtcagtggggccatgattttcgccct
gaatatgcggcgctaggccagttaaaacaactcttcccctatgtgcctatgatggcgctg
actgcaacagcagatcaggcaacgcgccaaagtatttgtgagcgtttaggtattgagcct
taccgactattatcgagttttgataggccgaatattcgctatacagttgccgaaaaacta
aatgccgctaaccagttacgacattttctactacaacaaaatggtagcagcgggattatt
tattgcagtagccgtcgccgtgttgatgaggtggccgatcgtttatgcctgcaaggtttt
aatgccaaggcttaccatgcggggatgacgcaggaagaccgtggtgcagtacaggacagt
ttccttaaagatcaaattgatatcgtcgttgcgaccgtggcgtttggtatggggatcaat
aagtcgaacgtgcgctttgtggtgcattacgatatcccgaaaagcatcgaagcctattac
caggaaacgggccgagctgggcgtgatgggctcgacgctgaagcttttatgctatttgat
ccggccgatattggccgagtgcgacatttgattgaacagtccgagccggggccgcagcaa
caggtcgaattccacaaactcaataccatggcggcctttgctgaggcgcaaacctgtcgc
cgccaagtgctgctgcattactttgatgaaagtgcattagagccctgtggtaactgcgat
atttgcctcgatccgcctaagcgctataacggcaccgaagatgcgcaaaaggtgctgtcg
tgtatttatcgactaggacagcgatttggtatcaatcacttaattgaagtgttacgcggt
tcgaaaggcgcaccgatagtcgatcgagggcatgacaaactcacgacttgggggattggt
aaagataaaagccatgaatattggctgagtgtgatccgtcaactcattcatctgggatta
gcaagccaagatgtgactcgtggctcctctattaccttaaacccatcggcacgacctgtg
ctcaaaggggaagtggcgttaatgcttgctgaaccgcgtattcagttaacaaccacaaaa
cgtaaggcgagtcagtctaaagcaccgcttaattatgaccgtaagttatttgcgcggcta
aaattgttgcgaagaaccattgccgaacagcaggacgtgccgccatatttagtgtttaac
gatgcgacactcgcagaaatggcggccatgatgccaacgagtgcgggtgaaatgctcgcg
gttaacggggttggcgagcgtaaactcagccgttttggtgacgatttccttgatgagatt
gcagcttatttagctggagagtga
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