Shewanella sp. JNE2: MZ182_02935
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Entry
MZ182_02935 CDS
T08546
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
shej
Shewanella sp. JNE2
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shej03019
]
MZ182_02935 (hrpB)
Enzymes [BR:
shej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MZ182_02935 (hrpB)
Messenger RNA biogenesis [BR:
shej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MZ182_02935 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UPO33203
LinkDB
All DBs
Position
644294..646813
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AA seq
839 aa
AA seq
DB search
MNSLPIYSLLAPLREAFSTHAQVILEAPTGAGKSTALPLAMLDWPEVTGRILMLEPRRVA
ARSVAHYIARCRQQNVGQEIGYRVRGESKVSANTRLEIVTEGILTRMIQQDPELTGIEVI
IFDEIHERHLTTDLGLALALEVQASLRDDLKILAMSATLSGLALGELMPSAAILHSEGRS
FPVEVEYCPVPSQQHWLEHLGRCIVELVSANTVTEKNTVHNDVLVFLPGKAEILRLVQYL
GERLDSDTFLICPLYGELSGAEQDRAIAVSTQGKRKIVLATNVAESSLTIDNIGFVIDRG
YKRQASFNPKTGVTRLSLKRISQASATQRAGRAGRLAAGVCIRLWSQEEQGRMLKADEPE
ICQADLVSMAHDCAYWGAKSFSDLMLLTSPPKVNEALAWQLLAHLGMVDGQNKLTPHGKA
AYELGCHPRLAHMLLSAKTLAEQLSQPELSSLACLLAGILEARGLPKKGADMMNYLYFAT
QGQVGQQVKQWQRKLAVSGDLSVIASHAHHKDVGLLLAFAYPDRIARARGVEGYQLANGT
GVVLAAEDGLAQTPWLVVADFQETEGKSAGRIYLASQLHPNLFDEALKPLLNITEQCGWD
EIKGRVVAERQYKIGQILFRSDSISKPERPQIVAALLNYIRLQGLKILNWNDNLEQLQYR
LQLAKALDASTDWPDISDTALLANLETWLAPYLENVNNLPQLQKLDCFSFVANQLSWQQQ
QMLETCLPTSWALVTGTHAPIVYDASGRALLRVRLQETFGMAQSPILAQGKLKVTMELLS
PAQRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDPVNTLPTKYTKKKTLGLSQS
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
ttgaactctctacctatttattctctacttgctccgctgcgtgaggcattttctacccat
gcgcaagtcattcttgaggcgcctactggggcgggtaaatctaccgctttgcctctggct
atgttggattggcctgaagtcactgggcgtattctaatgcttgagcctcgtcgagtcgcc
gcccgtagtgtggcacattatattgcccgctgccgacaacagaacgtagggcaagagatt
gggtatcgggtgcgtggagagtctaaggtcagcgccaatacacgcttagagatagttacc
gaagggattttaacgcggatgatccagcaagatcctgagttaacagggattgaagtgatc
atttttgatgagatccacgagcggcatcttacaacggatcttggccttgccttagcgctc
gaagtacaagcttccctgcgtgatgatttaaaaatattggctatgtcggcgacgttatcg
ggcttagccttgggtgaattaatgccctcggcggcgattttacacagcgaaggtcgcagt
ttccccgttgaagttgaatattgccccgtgccaagtcagcagcattggttggagcatctt
ggtcgctgtattgtcgagcttgtcagtgcaaatacggttactgaaaaaaataccgttcac
aatgatgtattagtctttttacccggcaaagctgaaatcctgcgattagtgcagtatttg
ggtgagcgtctcgacagtgatactttcttgatatgtccattatacggtgagctttctggt
gctgagcaagatcgcgccatagcggtatcgacacagggaaagcgtaaaattgtattggca
accaacgtggcagaatcgagcttaacaattgataatattggttttgttatcgaccgtggc
tataaacgtcaagccagttttaatcctaaaactggcgttactcgcctcagtttaaaacgc
attagtcaagcctcggcaactcaacgtgcagggcgtgcagggcgtttagccgcgggtgta
tgtattcgattatggagccaagaagaacaagggcgaatgctaaaggccgatgagcctgaa
atttgccaagcggatcttgtctcaatggcccacgattgtgcctattggggggctaaatcc
tttagtgacttgatgttactgacttcaccccccaaggtaaatgaagcactcgcttggcag
ttattagcgcatttaggaatggttgatggtcaaaataagttaactccccacggtaaagct
gcctatgagttaggttgccatcctcggcttgcccatatgttactgagtgctaaaacctta
gctgagcagttatctcaaccagaattatctagcttagcctgtttgcttgcggggatttta
gaggccagaggcttacccaaaaagggtgcagatatgatgaattacctgtactttgcgact
cagggacaagtggggcagcaggtaaaacaatggcaaagaaagttagccgtgtctggtgat
ttaagcgtgatagcctcccatgctcatcataaagatgtcgggttattattggcatttgcc
tatcctgatcgtatcgcgagggcgcggggcgtagagggatatcaattggctaatggcacg
ggagttgtgctcgccgcggaggatggacttgcgcaaacaccatggcttgttgtcgctgat
tttcaagaaacagaaggtaaaagtgcaggtcggatctatttggcaagtcagttgcacccc
aatctattcgatgaggcactaaagcccctgctaaatatcacagagcaatgcggttgggat
gagataaaagggcgagtagtggcagaacgccaatataagattggccaaatattgttcagg
tctgattcaatctctaagcctgaacgcccacaaatagtggccgcattactgaactatatc
cgtttgcagggattaaaaattctcaattggaacgacaacttagaacaactccaatatcga
ctccagttggctaaagcactggatgcgagtactgattggcctgatatcagtgacactgca
ttattggcaaaccttgaaacttggctggcgccttaccttgaaaatgtgaataatctgccg
cagttacagaaactcgattgttttagctttgtcgcaaaccaattaagttggcagcagcaa
caaatgctcgagacatgtttgccaacctcttgggcgttagtcactggaacgcatgccccg
atagtgtatgacgcctctgggcgagctttgcttagggtaagattacaagaaacctttggt
atggcacaaagcccaatattggcacagggcaaacttaaggtgacgatggagttgctctcg
ccagcacagcgaccattagcacttacagccgatttagccagcttttggcagggcccttat
gttgaagtcaaaaaagaaatgcgtggtcgttatccaaaacatttgtggccggacgatcct
gtgaatactttacctacaaaatataccaagaagaaaaccttgggtttatctcagtcatag
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