Shewanella sp. JNE2: MZ182_04110
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Entry
MZ182_04110 CDS
T08546
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
shej
Shewanella sp. JNE2
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shej03009
]
MZ182_04110 (srmB)
Enzymes [BR:
shej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MZ182_04110 (srmB)
Ribosome biogenesis [BR:
shej03009
]
Prokaryotic type
rRNA helicases
MZ182_04110 (srmB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UPO32034
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All DBs
Position
complement(901929..903188)
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AA seq
419 aa
AA seq
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MQFEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPAL
QHLIDFPRRFSGQARILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL
AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ
NMLFSATLEGGGVQRFAREVLKDPIEIDVDAPRSEKAKIHQWIHLADDKEHKFALLCHLL
RQEDVKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL
ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI
ERYIEQPLKRRVIEELRPKNKEARTPGKKKAKVKAKEAAKKTSKKEAAKKASKIARKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagatttccaccttgacccaagtttactcgagtcattaaaagccatgggg
catcattcgcccaccacaattcagcaagaaactatcccctatgcgctagaacagagggat
attctggcacgcgccccgactggcacaggcaaaaccgcaagctttttactgcctgcacta
caacatttaatcgatttcccccgtcgattttcgggccaagcacgcatattaattctcacc
cccacccgtgagttagcgagccaaattcatcgctatgcttgccacttagccacggaccaa
gggctagatattgccatcattactggtggtgttccctacgcaccgcaggaagaagcgctg
gcagggaacgtagatattctggttgcgacgcctggccgcttgatggaatacctagataaa
ggcaaattcagcgctgaagaagttgacatactgatcatcgatgaagccgatcgtatgctc
gatatgggattttcatccgtcgtccaagccatcgcactcgaagcccaaggtcgtaaacaa
aatatgctgttctcggcgaccttagaaggcggcggtgtgcagcgttttgcccgcgaagtg
ttaaaagatccaatagaaatcgatgttgatgcgccccgtagcgaaaaggcaaaaatccac
caatggatccatttagccgacgataaagagcataagtttgccctactctgccatttgctg
cgccaagaagatgtcaaacgcactattgtgtttgtaaaaacccgtgacatagtcactagc
ttagaaggccagttactcaaagccggcattccctgcgccttcatgcgtggcgatatggaa
caaaagaaacgtttccaagcattgagtcgctttactaaaggtgaagtcaacgtattgctc
gcaaccgatgttgccgcccgcggtatcgatatcgacgacattactcatgtgatcaacttt
gatatgcctcgctctgccgatacctatattcaccgaattggtcgaactggccgcgctggc
gccaaaggtactgcaatttcgcttgccgaagcccacgatatgcgtatcgtcggtaaaatc
gagcgttatattgagcaaccattaaaacgccgagtgattgaagagttacgtccaaagaat
aaagaagcgcgcacaccgggcaagaaaaaagccaaagtgaaagcgaaagaagctgcaaag
aaaacaagcaaaaaagaagcggccaagaaagcgagtaaaatcgcccgcaaaaagaagtaa
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