Shewanella sp. JNE2: MZ182_05695
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Entry
MZ182_05695 CDS
T08546
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shej
Shewanella sp. JNE2
Pathway
shej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MZ182_05695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shej03019
]
MZ182_05695
Enzymes [BR:
shej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MZ182_05695
Messenger RNA biogenesis [BR:
shej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MZ182_05695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
AAA_19
P-loop_SecA
AAA_22
SecA_DEAD
AroM
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
UPO32335
LinkDB
All DBs
Position
complement(1252459..1253760)
Genome browser
AA seq
433 aa
AA seq
DB search
MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMVEKPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK
LKRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR
QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVA
TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQKIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNAGAQVIAEKSMQGRRVKV
KVGQAPSKAKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttcccccgagattttgcgcgctatctcagattgcggt
tatcaacaaatgacgcctattcagcaacaagcgatacccgctattcgccgcggccaagat
gtgctcgccagcgcccaaacgggtacaggtaaaactgccgcctttgccctgcccattctg
caaaagatggttgaaaaaccaagcgaaactttaaagtcgaatgcaagagtattaattctt
actccaacccgcgagcttgcggctcaagtggctgacaacgtcacggcttactgtaaatat
ttaaattttagcgtattaaccatttatggcggcgtaaagattgagactcaagcgcaaaag
ctcaaacgcggtgccgatgttatagtcgcgaccccaggtcgtttactcgaacacttaacc
gcctgtaatgtaagtttatcaaacgtcgattttttagtgctcgatgaagccgatcgaatg
ctcgatatgggctttagtgccgacatccaaaaaattctgcaagcggtaaataaaaagcgt
caaaacttactgttttcagcaaccttctccagcgcagtcaaaaaactcgccaacgatatg
atggtcaaaccgcaggtgatcagcgtcgacaagcaaaacacgacagcagataccgtaagc
caagtggtttaccctgtggaacaacgccgtaaacgtgaattactatcagaacttattggc
aagaaaaactggcaacaggtattagtatttaccgcaacccgtgaagccgcagatacttta
gttaaagagttaaatttagacggtatcccatcagaagtggtccacggagaaaaaggccaa
ggaagccgtcgccgcgccctgcgtgaatttgtggcgggtgatgtgcgcgtactggttgct
actgaagttgccgcccgcggcttagatattccaagccttgaatacgtggttaactatgat
ttacctttcctcgcggaggattatgttcaccgtatcggtcgtactggccgtgcaggtaaa
acaggggttgccatctcatttgttagccgcgaagaagaacgtaccttagccgatatcgaa
aaattgatcggtcaaaaaattcgccgcgtcacagttcctggctatgaagtgggtagccgc
gaattgctattaaaacaactgcaaacccgtcgcagttttgctaaaaaacagcaaagaacc
gacaatgctggcgcccaagttattgcagaaaaaagcatgcaaggtcgccgcgtaaaagtg
aaggttggccaagcaccaagtaaagccaaaaaacttaaataa
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