Shewanella sp. JNE2: MZ182_06520
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Entry
MZ182_06520 CDS
T08546
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shej
Shewanella sp. JNE2
Pathway
shej03030
DNA replication
shej03430
Mismatch repair
shej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MZ182_06520 (dnaE)
03430 Mismatch repair
MZ182_06520 (dnaE)
03440 Homologous recombination
MZ182_06520 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shej03032
]
MZ182_06520 (dnaE)
03400 DNA repair and recombination proteins [BR:
shej03400
]
MZ182_06520 (dnaE)
Enzymes [BR:
shej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MZ182_06520 (dnaE)
DNA replication proteins [BR:
shej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MZ182_06520 (dnaE)
DNA repair and recombination proteins [BR:
shej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MZ182_06520 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UPO32488
LinkDB
All DBs
Position
1456451..1459924
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGA
GIKPIIGADFWMQVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEW
LLTYNEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLELIRTGRPDEER
YLHMAVALAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDFLVDCSKKGL
EERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDSLGPHRASMMAT
LPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDIGEARSHFAK
ALEVDLDAEKLTPAVLDSIEQAMSPWRSGAVPVLINYSQTLAKGQFRLADSWRVNPSDEL
VFALESLLGPNKVRIVF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttttctatgtccgatggc
gtagccaaagttaaacctattcttgcccaagttgaggcgttaggtatggctgcggtcgcc
ttgacggatcaaaacaacttctgtggattagtaaagttttacagtggctgccatggtgcg
gggattaagcccattattggtgccgatttttggatgcaagtgcctgggtttgaaggtgaa
ttctgtgcgttaaccattatcgcaatgaacaacgtgggttatcaaaatctcactcaaatt
atcagccaagcctatttgcgggggcaggtggcgggtcgagtggtgatcgatcaagagtgg
ttactgacctataacgaaggcatattattgctttctggcgctaaggaaggtgatattggt
aaggcgttacttaaggggaataatacccaagttgaatccctttgtgagttttatcaaacc
catttcgctgaacgctactttttagagctaatccgcacgggtcgacccgatgaagagcgt
tatttgcatatggccgttgcgttggcgcaggaaaaaggcttcccggttgtggccaccaat
caggtcgtgtttttaaaacccgaagatttcgacgcccacgaaattcgcgtggctatccat
gatggctttactcttgcggatccccgccgtcctaaaaagtacagtgagcagcaatactta
cgtagtgaagaggaaatgtgcgagctatttgctgacattcctgccgcactttctaatacg
gttgaaatcgctaaacgctgtaatgtgacaattcgtttatacgagtattttctgcctaac
ttccctacgggcgatatgtccatcgaagactttttggtggattgttcgaagaagggtctc
gaggagcgcctcgcgtttttatttcccgatccacaggttcgtgccgagcgccgcggcgaa
tacgatgagcgcctagatatcgaattgcaagtgatcaaccaaatgggtttccccggttac
ttcttgatcgtgatggagtttatccaatggggtaaggataatgggattcctgtagggccg
ggccgtgggtcgggcgcaggttcgcttgttgcctatgctcttaaaattactgacttagat
ccgcttgaatttgacttactgttcgaacgattcctcaaccccgagcgggtttctatgccc
gactttgacgtcgacttctgtatggatagacgggacgaggtgatagaccatgtggccgag
ttatacggccgtgaagcggtgtcgcaaatcatcaccttcggtactatggccgcaaaagcg
gttatccgcgacgttggccgcgtgctaggtcatccctatggttttgttgaccgtatttca
aaacttattccccctgagccagggatgacactggctaaagcctttgaggtcgaacctgcg
ctgcaggagtcctacgacgccgatgaagatgttaaagatcttatcgacatgtgtcgtaaa
cttgagggcgtgactcgtaacgcgggtaagcatgcgggtggggtggtaattgcacccact
aaaattaccgattttgcaccactttattgtgatgctgagggtaaaaacccagtaacacaa
ttcgataaaaacgatgtggaaaccgcaggccttgtgaagtttgacttcttggggctacgg
acactcacgattgtcgattgggcgctggagatgatcaacaaagtggaggtcaaaaatggc
cgccctcctgtacgtatcgaggcaattcctttagacgatcctgcctcgtttcgattatta
cagcgttatgaaaccaccgctgtttttcagcttgaatcccgcggtatgaaggatttgatt
aagcgacttcaacccgattgcttcgaggatatgatcgcgcttgtcgccctgttccgtcct
gggcctttgcaatcgggcatggtggataactttatcgagcgtaagcatggccgcgaggaa
gtgtcttacccagattcccaataccagcacgaatccttaaaggaattactctcacctacc
tatggcattatcttgtatcaagagcaggtcatgcagatagcgcaggtgctttctggctac
actctaggcggcgccgatatgcttcgccgtgccatgggtaagaaaaaacctgaagagatg
gctaaacagcgtagcatctttaaagagggtgcgattaaaaatggcgtcgacggtgagttg
tcgatgaaaatcttcgacttagtggaaaagttcgccggttatggttttaacaaatcccac
tccgccgcttatgccttggtttcctatcaaaccttgtggttgaaaacccattatccttca
cagtttatggcggcggtgatgtccgcggatatggataacaccgacaagatagtgacactg
gttgatgagtgcgaacgcatggggctcactctgatcccgcccgatgtgaacaaagggcta
tttaaatttactgtcgatgatgatctgcgaattgtttatggtatcggtgccattaaaggt
gtgggtgagggccctgttgagtcgattttagaggcgcgtaaagatggcccctttgttgat
ttattcgatttctgtgcccgtatcgacctgaaaaaactcaataaacgtgtgattgaaaag
cttatctgcgcgggtgccttagattccctcggaccgcatcgcgcttcgatgatggcgacc
ttacccgaagcgatgcgcgccgccgatcaacatgccaaagcgcaggcaattggtcagcac
gatatgtttggcctacttaatagtgagccggaagatagcaaacaacagtttgtggaatgt
accccatggccagataaaatttggcttgagggagagcgtgaaactttagggttatattta
actggtcaccctattaatcaatatcttaaagaacttaagtactatacttcagggcgctta
aaagatgtgcatcctactgaacgtggtaaaacggtaaaggccgcaggtttagttgtcgcg
actagggtgatgctgaccaaacgcggttcaaagatgggattgttgacactcgatgacaag
agtgcgcgcctcgaggtgatgttatttaccgaagcctttgagaaatttaatcacttgctc
gagaaagataggatccttatctgcgaaggtgaagtaagttttgatgattttgctggtggt
aatcggatgactgctcgcaatattattgatattggtgaggcgcgtagccattttgctaag
gcgcttgaagtcgaccttgatgccgagaagttaactcctgcggttttagacagtattgaa
caagccatgagcccttggcgaagtggtgctgtgccagtactcattaattacagtcaaact
ctggctaaaggacaatttagacttgctgatagttggcgagttaacccttctgatgaatta
gtcttcgcccttgaaagtttacttggcccaaataaagttaggatcgtgttttga
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