Shewanella sp. JNE2: MZ182_07730
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Entry
MZ182_07730 CDS
T08546
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
shej
Shewanella sp. JNE2
Pathway
shej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MZ182_07730 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shej03019
]
MZ182_07730 (rne)
03009 Ribosome biogenesis [BR:
shej03009
]
MZ182_07730 (rne)
Enzymes [BR:
shej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MZ182_07730 (rne)
Messenger RNA biogenesis [BR:
shej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MZ182_07730 (rne)
Ribosome biogenesis [BR:
shej03009
]
Prokaryotic type
rRNA processing factors
MZ182_07730 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UPO32712
LinkDB
All DBs
Position
complement(1732268..1735648)
Genome browser
AA seq
1126 aa
AA seq
DB search
MQRNVMFDDLYLKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIY
KGKITRVEPSLEAAFVDYGADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIV
QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPA
GMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYL
RRDVGEILIDHPRIYEEAKQHISLVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREV
RLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLV
VIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHI
CPRCHGQGTIRSTESLALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITE
QRHDVEVYVIPDAHMMTPDYRVIRHRSDDEISESSYKRIEHPEAKLYEPRKLERTAAPTP
ALKGFAAPQKVEQAPSPTVKIEAPQPSFFSKLIGTITALFASSDKAEPAKTTETKNTDTN
AANANRRNRRTDTRRPRNSQDADKAKEGNREPRNRNAKKTAEPVAVATQERTVREKEDSA
KRPAKVETKPRVQAPKEVIADLEADAPKQEVARERRQRRNMRRKVRIDNGNNTPDNAIPI
APEEAAEVLAEIAAINAAASIDAKAEVAAEAPTIEPKAPRARRQPRKEAIPAQATLEAVA
EEGTPVETAPIETASVDVVEIPVTVTADTSEMAEPLVVSQHNEAESAEDENTSADEQSKR
EQRDGQRRSRRSPRHLRAAGQRRRRDEDDQGVSAPAQFVPNDELGADQEYPTEVTHSAHV
TGPSSAPMVEAVKAETVEQAETVAVVEDTAPVTAPASTTEIEKIAIADAPVAETPVIQKV
AAEATITPVVSETTETQVLGPKIEETKAETVEDIAEAKTEPQVVLQPASVVKATVAQDIT
KVPTKAVASAPMTKPAAIVKPQPKVQTEATNVNSQAADVTDAVVSKPKTTSRFGAMVSSD
MTKPVVEVRTQVEVPKGREYDNTASEDTSAPKVKLANSAESDMARP
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaaacgtgatgtttgatgacctctatttaaagaagaatgacgtcatcatgaaa
cgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgcccttgttgatgggcaa
caactgtatgatctagacattgaaagcccaggtcatgagcaaaaaaaatccaatatttac
aaaggtaaaattacccgcgtagaaccctctttagaagccgctttcgtcgactatggcgcc
gatcgtcacggctttttgccactaaaagaaatcgccagagagtatttccctaagggttat
tccttccaaggccgccccaacatcaaagaagtcgtcagtgaagggcaagaagtaattgtc
caaattgacaaagaagaacgtggtaataaaggtgcagccttaactacattcatcagttta
gcgggctcttacttagtattaatgccaaacaaccctcgtgcaggcggaatttctcgtcgc
attgaaggtgatgagcgcactgagttaaaagaagcgatggctgatttggaagtgcctgct
ggtatggggctgattgtacgtactgcgggtgtaggcaaagaatctgccgagttaaagtgg
gacttaaaagtactccaacatcactgggcagccatcactgaagcggcccaaaccaaaggc
gctcctttcttaattcatcaagaaagcaatgtgattgtacgtgcgatccgtgactatttg
cgtcgtgatgtaggcgaaattctcatcgatcatccccgtatttatgaggaagctaagcaa
catatttccttagttcgtcctgattttgttgagcgagtaaaactttacgaagctgaagta
ccgctattcactcacttccaaattgagtctcaaatcgaatctgccttccagcgagaagtc
cgtttaccttctggtggttcgatagttatcgacccaactgaagccttaacatctatcgat
attaactctgcccgtgcaactaaaggcggcgatattgaagagactgcgcttaacaccaac
ctcgaggctgccgatgaaattgctcgccaattacgtctacgcgatttaggtggcttagtg
gttatcgactttatcgatatgacgcctgtgcgccatcagcgtgaagttgaaaaccgctta
cgtgacgccgttcaccacgaccgcgcccgagtgcagttaggccgtatttctcgtttcggt
ttaatggaaatgtcgcgtcagcgcctgcgtccctctttagaagaatctgcggcgcatatc
tgccctcgctgtcatggccaaggcacgattcgcagtactgagtctttagcactgtcaatt
ttacgtttgatggaagaagaagccatcaaagaaaacacctcacaaatcgaagcgattgtg
cctgtggatgttgcggctttcttgttaaacgagaaacgcaaagctattcgcatcacagaa
caacgtcacgatgtcgaagtatatgtaatacctgatgcgcacatgatgacgccagattat
cgtgtgatccgtcaccgtagtgacgacgaaattagcgaatctagctataaacgtatcgaa
catccagaagctaaattgtatgagccacgtaaactggaacgtactgctgcgccaacgcct
gctttaaaaggtttcgctgcgccacaaaaagtggaacaagcaccatcaccaacggtgaaa
atagaagcgccacaaccaagtttctttagcaagctgataggcaccattacagcattattt
gcatcaagtgataaagctgaacccgcaaaaacaacggaaaccaaaaatactgatactaat
gcggctaatgcaaatcgccgtaaccgccgtacagacacccgtcgccctcgaaatagtcaa
gacgctgataaagcgaaagaaggcaaccgtgagccacgtaatcgcaatgcgaagaaaact
gccgaaccagtagcggtagcaactcaagaacgtacagttcgcgagaaagaagactcggca
aaacgtcctgcgaaagtggaaactaaacctcgtgttcaagctccaaaagaagtcattgca
gatctagaggccgatgcaccgaagcaagaagttgcccgcgaacgccgtcaacgtagaaat
atgcgtcgcaaagtccgtatcgataatggcaataacacgccagataacgcgatcccaatt
gcaccagaggaagccgcagaagtactcgcggaaattgcagccattaacgccgcggcaagt
attgatgctaaagccgaggtagctgccgaagcgccgactattgaacccaaagcaccaaga
gctcgtcgccaaccgcgtaaagaagctatccccgctcaagctacgctagaagcggtagcc
gaagaaggtactcctgttgaaacagcaccaatagagaccgcttccgttgatgttgtggaa
atacctgtaactgtcactgcagacacttcagaaatggctgaacctcttgtcgtatctcaa
cataacgaagctgaaagtgctgaagatgagaacactagtgcagatgagcaatcaaaacgc
gaacaaagagatggtcaacgtcgtagccgccgtagtccacgtcatcttcgcgctgctggc
caacgtcgtcgtcgtgatgaagatgatcaaggcgtctcagcaccagcccagttcgttcct
aacgacgaattaggtgcagatcaagaatacccaactgaagtcactcacagcgcacacgtt
acgggtccaagttcagccccaatggtagaagctgtaaaagcagaaacagttgagcaggca
gaaactgtcgccgtagtggaagataccgctccagttacagcgccagcatctactacagaa
atagaaaagattgctattgcagacgctcctgtggcagaaacacctgtcattcaaaaagtg
gctgccgaagcaacaatcactcctgttgtgtctgaaaccactgaaactcaagtgctaggg
ccaaaaatcgaagaaaccaaagcagagacagttgaagatattgctgaggccaaaacagaa
ccacaagtcgttttacaacccgcctcagtggttaaagcaactgttgcacaagatatcact
aaagtaccaactaaagcagttgcatctgcaccaatgacaaaaccggcagccattgttaaa
ccacaacccaaggttcaaacagaggccaccaatgtcaattcacaagcggctgatgttact
gatgcagttgtaagcaaacctaaaacaacaagtcgttttggggctatggtatcgtcggat
atgactaaacctgtcgttgaggtgagaacgcaagttgaagtgccaaaaggacgcgagtat
gacaatactgcgagcgaggatacctctgcacctaaggtcaaactagcgaacagcgcggaa
tcggatatggctcgcccataa
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