Shewanella sp. JNE2: MZ182_12575
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Entry
MZ182_12575 CDS
T08546
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shej
Shewanella sp. JNE2
Pathway
shej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MZ182_12575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shej03019
]
MZ182_12575
Enzymes [BR:
shej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MZ182_12575
Messenger RNA biogenesis [BR:
shej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MZ182_12575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Cas3-like_C_2
ElaD-SseL-like_C
YneP
Motif
Other DBs
NCBI-ProteinID:
UPO29885
LinkDB
All DBs
Position
complement(2835550..2836833)
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AA seq
427 aa
AA seq
DB search
MTQASSSVASFAQLGIIAPLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKT
AAFAVPLLQQLVDAKTEDKTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAF
GGVSVNAQMQSLRSGADVLVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEEL
AQVLDALPVKKQTLLFSATFPEEVRELTAKLLNNPLEYQLQSEQESTIHQRVITVNRPMK
TALLAHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFK
NGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHE
DYHHFGVIEKKNKLKLVREQIVGFEADDDMPAELLEQAKPVAKPEGTGKKKRKQLPQANV
EFWGKKS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgactcaggcttcttcctccgtggcaagctttgcccaactcggcattattgcacccttg
ctaaatcgattaaccgaattagcgtatgtttcgcccacaccagtacaggcggcaacgatt
cccgctgtgcttgcggggcgcgatgtgttagccggtgctaatacgggctcgggtaaaacg
gcagcctttgccgtgccgctgttgcaacaacttgttgacgcaaaaacagaggataagaca
ggcgcttatgttcgttgtttggtcttagtcccaacccgcgaattagcccagcaagtcgca
gacagctttttatcctatgcctcacatcttaatggcaagctaaaaattgtcgctgcgttt
ggcggtgtgtcggtgaatgcgcaaatgcagagtctacgctctggcgccgacgtcctagta
gcaacgccgggtcgtttgttagatctgttgtcgagtaacgccatcaaacttaaccgcgtt
agtgccttggtgctcgatgaagccgaccgcatgttaagtcttggctttaccgaagaatta
gcccaagtgctcgacgctttgcccgttaagaaacaaaccttattattctctgcgacattc
cctgaagaagtccgtgagttaacggcaaaactgcttaataatccacttgaatatcaattg
caaagtgagcaagaaagcacgattcatcagcgggtgatcaccgttaatcgtccgatgaaa
accgcattattggcgcatctgattaaagaacatcagtggtcacaggcgttgatcttcgtg
agtgccaaaaatacctgtaatcacttagcgcaaaagctgtctaaacgtgggatcactgcc
gaagtgttccatggcgataaagcccaaggcgcgcgtacgcgggtgctcgatggctttaaa
aatggcgagatcagtgtgttaattgcgaccgatattgccgcccgtggtatcgatatcgat
aaactgcctgtggtgattaactttgatttaccaaggagccctgcagattatatgcatcgt
attggccgtagtggccgcgccggtgaagcaggcttagccgtgaccttgatttcccatgag
gattatcaccactttggcgtgatagagaaaaagaacaaacttaagttagtgcgtgagcaa
attgtcggttttgaagccgatgatgacatgccagccgaactgttagaacaagcaaagcct
gtcgctaagcccgaaggcacaggtaaaaaaaaacgtaaacagttaccgcaagctaatgtt
gaattttggggaaaaaaatcttaa
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