KEGG   Shewanella sp. JNE2: MZ182_12695
Entry
MZ182_12695       CDS       T08546                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
shej  Shewanella sp. JNE2
Pathway
shej02020  Two-component system
Brite
KEGG Orthology (KO) [BR:shej00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    MZ182_12695
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:shej02022]
    MZ182_12695
Two-component system [BR:shej02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   MZ182_12695
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 AAA_5 HTH_8 AAA_2 AAA_7 FleQ AAA_3 AAA_16 AAA Mg_chelatase HTH_50 ATPase
Other DBs
NCBI-ProteinID: UPO29894
LinkDB
Position
2851636..2853015
AA seq 459 aa
MNAPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKAITRTEPKDIAKLLDKDWAGVVISD
VNMPQLDGISLMQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDV
VKRALDKRSLTLENRKLKKELESQSVPGPRILGHSVGINRMRHIIEQVINTPADVLIEGE
TGTGKELVARYLHDHSNRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKMRVGKFE
YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSINLDIRVIAATKVDLKSLCD
TGEFRQDLLYRLNLVTVPIPPLRDRREDIPLLFLHFARVASARYHKALIALNAEQNAILT
SHDWPGNVRELRNLAERYVLLGGEAAFAGSLGNTPSLHSSMSLLQRVEFFERVLIEEALS
HNKGSIKLTMEQLELPRKTLYDKMRKYDLDRKQYVNSED
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgaatgcgcccaattcaatccaagactattcagtacttatcatcgatgatgagccacat
ataggcaccgtcttagtgcaattgttcgaactagaaggtattaaagccatcactcgcact
gaacctaaagatattgccaaactgcttgataaagattgggccggagtcgtgatctccgat
gtgaatatgccacagcttgatggcattagtcttatgcaacaaattcgccagcaagatcct
gatttacccgtagtcctactcacaggttttggcgatatcgctatggcagttaatgcctta
aagcaaggcgcttacgattttctcgaaaaaccctttaataatgaacatatgcttgatgtg
gttaaacgtgccttagataaacgcagtttgaccctagaaaaccgtaaactaaaaaaagag
ctagagagccaaagcgttcccgggccacgtattttggggcacagtgttggcattaaccgt
atgcgccatattattgaacaagtcatcaatacgcctgctgacgtattgattgaaggagaa
acaggcacaggtaaagaactcgttgcccgttatctgcacgatcacagcaaccgtaaccaa
gccaactttgtggccattaactgcggcgcgatccctgaaaatcttatcgaaagtgaactc
tttggcgccgaagctggtgcctttacgggggtcgataaaatgcgggtgggtaagtttgaa
tacgctaatggtggcacactgtttttggatgaaattgaaagtacaccactctcgcttcaa
gtgaaactactcagagtgttagaagatcgtaaagttgaacgcttaggttccaataaaagc
atcaatttagatatacgtgtgattgccgccaccaaagttgatttaaaaagcctgtgtgat
actggggagtttcgtcaagatttactctaccgcttgaatctagtgacggttcccattccg
ccactaagggatcgacgtgaagatattcccctactctttttacattttgcgcgagtcgca
tcggctcgatatcacaaagcacttatcgcgttaaatgctgagcaaaatgccatactcacc
tcacacgactggccgggcaatgtacgtgaattacgtaatctggctgaacgctatgtactc
ctcggtggagaagccgcttttgccggttcacttggcaatacaccaagtctgcactccagc
atgtctttactgcaacgggtcgagtttttcgagcgtgtactgattgaggaagccttaagc
cacaacaaaggcagtatcaaactgacgatggaacagcttgaactccctcgcaaaacctta
tatgacaagatgcgcaaatatgatttagaccgcaagcagtatgtaaattcagaggactag

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