Shewanella sp. JNE2: MZ182_19090
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Entry
MZ182_19090 CDS
T08546
Symbol
speF
Name
(GenBank) ornithine decarboxylase SpeF
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
shej
Shewanella sp. JNE2
Pathway
shej00330
Arginine and proline metabolism
shej00480
Glutathione metabolism
shej01100
Metabolic pathways
shej01110
Biosynthesis of secondary metabolites
shej04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
shej00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
MZ182_19090 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
MZ182_19090 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
MZ182_19090 (speF)
Enzymes [BR:
shej01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
MZ182_19090 (speF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
GKRP_SIS_2
Motif
Other DBs
NCBI-ProteinID:
UPO31051
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All DBs
Position
4304998..4307160
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AA seq
720 aa
AA seq
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MKSLKVAASLSVRSCFDIDREVVNVLTTDFCDVGAAVVSVDDVRNGIVEKIKNTGLKLPI
FVSVCCEETFPDDVCSSITGVFELCGDNTDFYGKQVETAVNKYEQALLPPFFGTLKKYVE
MGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETIFRADMCNADVKLGDLLIHEGAPLDAQ
KYAAKVFNADKTYFVLNGTSSSNKVATNALLAKGDLVLFDRNNHKSNHHGALIQAGATPI
YLETARNPFGFIGGIDAHCFQESYLREQIREVAPERADEKRPFRLAIIQLGTYDGTIYNA
RQVVDRIGHLCDYILFDSAWVGYEQFIPMMNDCSPLLLELTPEDPGIIVTQSVHKQQAGF
SQTSQIHKKDKHIKGQARYCNHKRFNNAFMMHASTSPFYPLFAALDVNAKMHEGASGRYL
WREAVKAGIEARKLLLKKCKYIKPFVPTMIDGRLWQEYETEQMADDLRFFEFEPGQKWHS
FDGYEKGQYFVDPCKFLLTTPGIDAETGKYTEFGIPATILANFLRENNIIPEKCDLNSIL
FLMTPAEDMAKMQHLVSQISRFEKLVDEDAPLSEVLPNVYNANKARYKDYTIRQLCQEMH
NLYVSHDVKQLQKEMFRKAHFPTKVMDPQEANLEFIRGKVELVPLSQIEGRIAAEGALPY
PPGVLCMVPGEIWGGAVQRYFLALEEGINLLPGFSPELQGVYLENTAEGKIQALGYVLAK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattaaaagtagccgctagcttatctgtcagatcttgtttcgatatagacaga
gaagtcgtcaacgtattaaccactgatttttgcgatgtaggtgcggctgttgtctctgtt
gatgatgttagaaatggtattgttgaaaagattaagaataccggattaaaactaccgatt
ttcgtttcagtttgctgtgaagaaaccttcccggatgatgtatgctcatcaattactggg
gtatttgaactctgcggagataacactgacttctacggaaaacaggtggaaactgcggtt
aataaatatgagcaagctttattaccccctttctttgggacactcaaaaaatacgtcgaa
atgggcaactcaacctttgcttgccctggccatcaaggtggacaattcttccgtaaacac
cctgtaggccgtcagttcttcgacttttttggcgaaactattttccgtgctgatatgtgt
aatgccgacgttaaattaggcgacctactcatccatgaaggtgcaccgctggatgcacaa
aaatatgcggctaaagtgtttaatgccgataaaacttatttcgtactcaatgggacttct
tcttccaataaagtggccactaatgcgttattagcaaaaggggatttagtactctttgat
cgcaataaccataaatctaaccaccatggcgcgctaattcaagcgggtgcaacaccgatt
tatttagaaacagcacgtaaccccttcggttttattggtggtatagatgcccactgtttc
caagaatcttatttaagagaacaaattcgtgaagttgccccagaacgcgccgatgaaaaa
cgcccattccggttagcgattatccaactgggtacctacgacggtactatctataatgct
cgccaagtggttgatcgtattggtcatctatgtgattacattctgtttgactcagcttgg
gtgggctatgaacagtttattcccatgatgaatgactgttcaccactactgctcgaactg
acgccagaagatcctggtattatcgtgacgcagtctgtacacaaacaacaagcaggcttc
tcacagacctcacaaatccataaaaaagataagcatatcaaaggccaagcgcgatactgt
aaccataagcgtttcaataacgcctttatgatgcatgcctcaaccagccccttctatcct
ctgtttgcggcgctggatgtgaacgcaaaaatgcatgaaggagcaagcggtcgttatctg
tggcgcgaagcggtaaaagcgggtatcgaagcgcgtaagctattgcttaaaaagtgtaaa
tatatcaaaccattcgtgccaaccatgatcgacggtcgcctatggcaagaatatgaaacc
gagcaaatggccgacgatttacgcttctttgaattcgaacccggtcaaaaatggcactcc
ttcgacggttatgaaaagggccaatatttcgttgatccttgtaaattcctgttaacaact
ccgggtattgatgccgaaacgggtaaatatactgagttcggaattcccgcgactattttg
gctaactttttacgggaaaataatattattccagagaagtgcgacttaaattcgatttta
ttcctgatgacacctgcagaagatatggcaaaaatgcaacacttagtgtcgcaaatatcc
cgcttcgaaaagttagttgatgaagatgcaccattatccgaagtcttacctaatgtttat
aacgccaataaagcccgttacaaagattatactatccgccaactctgccaagaaatgcat
aatctttatgtcagccatgatgtaaaacaattgcaaaaagaaatgttcagaaaagcacat
ttcccaactaaggtaatggaccctcaagaagctaatcttgaatttattcgcggtaaagta
gaactagtcccactctctcaaattgaaggtcgtatcgctgccgaaggtgcgctgccatat
ccaccaggagtgctatgtatggttccaggtgaaatatggggaggtgctgtacagcgttat
ttcttagcccttgaagaaggtatcaacttattacccggattctcgccagagttgcaaggt
gtttatctcgaaaacaccgccgaaggcaaaatccaagcattaggttatgtattagctaaa
taa
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