Shewanella sp. LZH-2: JM642_00020
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Entry
JM642_00020 CDS
T10525
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
shel Shewanella sp. LZH-2
Brite
Enzymes [BR:
shel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
JM642_00020 (gyrB)
DNA replication proteins [BR:
shel03032
]
Prokaryotic type
DNA Topoisomerases
JM642_00020 (gyrB)
DNA repair and recombination proteins [BR:
shel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JM642_00020 (gyrB)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QRK79574
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Position
3765..6182
Genome browser
AA seq
805 aa
AA seq
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MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI
TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATKTGTEIRFWPSEQTFSDV
EFHFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFVDYLNRNKTPVNKDV
FHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMEN
EGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLND
YLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSE
IYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKK
GKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVARLEQ
RYPTHITNRMLYHPMISNEMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVLDPERKV
YLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEVGSF
IEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTC
LMGDQVEPRREFIEANALNVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagaatagttacgattcttcgagtattaaggtccttaagggccttgatgcagta
cgtaagagacctgggatgtatattggtgacaccgacgacggtacgggtctacatcatatg
gtgttcgaagtagtcgataactctatcgatgaagccttagcgggccattgtactgatatc
acaattactatccatgtggatggttcggtttctgttaaggatgatggccgtggtattccg
gtctctatccatgaagaagaaggtgtatcggccgcagaagttatcatgacggttctgcat
gctggtggtaagttcgacgataactcctataaagtgtcaggtggtctgcacggtgtgggg
gtgtcggtggtcaacgcgctttctaaaaagctgcaattaactattcgtcgcgatggtaaa
gtccacgagcagttttacacccatggtgtacctgatgcgccaatcaaagagattggtgat
gcaactaaaacgggtaccgaaatccgtttctggccaagtgagcaaactttcagtgatgtt
gagtttcactttgaaatcctggctaaacgggtgcgagaactatcgttccttaactctggt
gtggggattcgcttagtcgacgagcgtgataataaaaacgaattctttaaatacgaaggc
ggtatcagcgcattcgttgattacttgaaccgtaataaaacgccggtaaacaaagatgta
ttccactttatgcaggagcgtgacgacggcattaccgttgaagtggcgatgcagtggaac
gatggttaccaagaaaacatattctgttttaccaacaacatcccgcagcgtgacggtggt
actcacttagccggtttccgtagtgcgttgacacgtaacctcaacaactacatggaaaac
gaaggttataacaagaaaggcaaaaccaacgcgactggcgatgacgcccgcgaaggttta
acggctgttatctcggttaaagtgcccgatcctaagttcagctcgcaaaccaaagacaag
ctagtgtctagcgaagtgaaagccgcggttgaacaaaccatgggtgaaaagctaaacgac
tatctgcttgaaaatcctgccgatgctaagttaatcgttggtaagattgttgatgcggct
cgtgcccgtgaagcggcgcgtaaagcccgtgaaatgacgcgtcgtaaaggcgcgctcgat
ttaggtggtttgcctggtaagctggcggattgccaagagaaagaccctggtctttcagaa
atctacatagtggaaggggactctgctggcggtagcgctaagcagggacgtaatcgtaag
aatcaagcgattctgccactgaaaggtaaaatcttaaacgttgagaaagctcgtttcgat
aaaatgctgtcttctcaagaggttgcaacactaatcaccgcacttgggtgtggtatcggt
cgtgatgaatacaacccagataagactcgctaccacaacatcatcatcatgacggatgct
gacgtcgacggctcgcacattcgtaccttgctgttgaccttcttcttccgtcaaatgcct
gaactgatagaacgtggttatgtgtatattgctcagccgcctttattcaaagtgaagaaa
ggtaagcaagaacaatatctgaaagatgaagcagcactgactcagtatctgaccactcaa
gcgttagatggaaccagcatttatccatctcaaggtgcgccaggtatgtcgggtgagcca
ttagagcgtttagtgacgcaataccgcgaagtagaagcgattgttgcccgtttagagcaa
cgttatccaacccatatcactaatcggatgctttaccacccaatgatcagcaatgagatg
ttggccgatgaagctaagatgaaggaatggatagacgcctttatccatgagttggtggaa
ttagaaaacagcggcgtgctgtattctggtgagcctgtactcgatcctgagcgtaaagtg
tatttgccaaagatcaccatccgtaaacatggtatcgacacgcattacctatttagctat
gacttcttccaatcaatggattatcaacgtattgctaagttaggtgcagccctagaaggc
ttgattgaagtcggtggttatgtgcaacgtggcgaccgagtgaaagaagttggcagcttc
attgaagcgctagattggacgatttctgaagcgaaacgtggtctctatatccaacgttat
aaaggattgggtgagatgaaccctgagcaattgtgggaaaccacaatggatcctgaatca
cggcgtatgctgcaagtgaccattgatgacgccgtcggcgcagaccaattgtttacttgc
ttgatgggcgatcaagtagaaccgcgtcgtgagtttattgaagccaacgcgctgaacgta
gctaacttagacgtttaa
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