Shewanella sp. LZH-2: JM642_00070
Help
Entry
JM642_00070 CDS
T10525
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel00071
Fatty acid degradation
shel00280
Valine, leucine and isoleucine degradation
shel00310
Lysine degradation
shel00362
Benzoate degradation
shel00380
Tryptophan metabolism
shel00410
beta-Alanine metabolism
shel00640
Propanoate metabolism
shel00650
Butanoate metabolism
shel00907
Pinene, camphor and geraniol degradation
shel00930
Caprolactam degradation
shel01100
Metabolic pathways
shel01110
Biosynthesis of secondary metabolites
shel01120
Microbial metabolism in diverse environments
shel01200
Carbon metabolism
shel01212
Fatty acid metabolism
Module
shel_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
JM642_00070 (fadB)
00650 Butanoate metabolism
JM642_00070 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
JM642_00070 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
JM642_00070 (fadB)
00310 Lysine degradation
JM642_00070 (fadB)
00380 Tryptophan metabolism
JM642_00070 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
JM642_00070 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
JM642_00070 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
JM642_00070 (fadB)
00930 Caprolactam degradation
JM642_00070 (fadB)
Enzymes [BR:
shel01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
JM642_00070 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
JM642_00070 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
JM642_00070 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
JM642_00070 (fadB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
QRK79584
LinkDB
All DBs
Position
complement(17767..19917)
Genome browser
AA seq
716 aa
AA seq
DB search
MIYQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQQSNIQALVLTSG
KDTFIVGADITEFLGLFAQDDSVLLSWVEQANAVFNKLEDLPFPTACAIKGFALGGGCET
ILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQSGEDALK
VGAVDAVVAPEALEAAAIQMLKDAVAEKLDWQARRQRKMSPLTLPKLEAMMSFTTAKGMV
FSVAGKHYPAPMAAVNVVEQASTKGRAEALQIEHQAFIKLAKTDVAKALIGIFLNDQFVK
GKAKKAGKLAKDVKSAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQPALDLGLGEAAKLL
SAQVARGRSTPEKMAKVLNNITPALDYAPVKHADVVVEAVVEHPKVKAQVLAEVEQYVSE
DAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEYSSEETIASVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRLGQKNGKGFYAYSVDSRGKP
KKDVDPTSYELLKAAFGEQKAFDADEIIARTMIPMIIETVRCLEEGIVASPAEADMGLVY
GLGFPPFRGGVFRYLDTMGVANFVALADKYAHLGGLYQVTDAMRALAANNGSYYQA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatctaccaaagtcctacaattcaggttgagttactcgaggataatattgccaagctg
tgctttaacgcacccggttcggtgaacaaattcgacagagaaacactcgcctcactcgat
gccgcattagacagcattaaacaacaatcaaacattcaggcattagtgctcacctcaggt
aaagatacctttatcgtgggtgccgacattactgaatttttaggcttattcgcacaagat
gattcagtactactctcttgggttgaacaggccaatgccgtattcaataaacttgaagat
ttacctttcccaaccgcttgtgcaattaaaggttttgccctaggcggcggttgtgaaacc
attctggcaacggatttccgtattgctgacaccacagccaaaatcggtctacccgaaacc
aagctaggcatcatcccaggctttggtggcacagtgcgtttaccacgtgtgattggtgct
gacaacgcccttgagtggatcaccacgggtaaagaccaaagcggcgaagatgcattaaaa
gtcggcgctgttgacgccgttgtcgctccagaagccttggaagctgcggcgattcaaatg
ctaaaagatgcagtagcagaaaagcttgattggcaagcgcgtcgccaacgcaagatgtca
ccactgaccttacctaaactcgaagctatgatgtctttcactacggctaaaggcatggtt
ttctctgtcgcaggcaaacattacccagcaccaatggcagcggtaaacgtagttgaacaa
gcgtcgaccaaaggccgcgccgaagcactacaaattgaacatcaagctttcatcaagtta
gcgaaaaccgatgtagccaaagcactaatcggtatcttccttaatgatcaattcgttaaa
ggtaaagctaagaaagcgggcaagctcgctaaagatgtgaaaagcgcagccgtattaggt
gccggcattatgggtggcggtatcgcttaccaaagcgccagtaaaggcacgccaatcgtg
atgaaggatatcgctcaacctgcattagatttaggtttaggcgaagccgccaaactgtta
tctgcgcaagttgctcgtggccgctctaccccagaaaaaatggctaaagtgctgaacaac
atcacccctgccttagactatgccccagtgaaacatgctgacgtggttgtcgaagccgtc
gttgagcatccaaaagtgaaagcacaagtactggctgaagttgagcaatacgtcagtgaa
gatgcgattatcgcctctaacacgtcaactatttcaattaacctgctcgcgaagagcatg
aagaagcctgagcgcttctgtggtatgcacttctttaacccagtgcacaaaatgccatta
gttgaagttatccgtggcgagtacagctcagaagaaaccatcgcatctgttgttgcctac
gccagcaaaatgggtaaaaccccaatcgttgttaacgattgcccgggattcttcgttaac
cgcgtactcttcccgtactttgcgggctttaacggcctgctcgccgaaggtggcgacttt
gccgctatcgataaagtgatggaaaaacaattcggctggccaatgggccctgcttatctg
ctagacgttgtcggtttagacactggccaccacgcccaagcagtaatggccgaaggcttc
cccgatcgtatgggcaaatctggcaatgacgcgattgacgtgatgttcgaaaacaaacgt
ctcggtcagaagaatggcaaaggcttctacgcttactctgtggatagccgcggtaagcca
aagaaagacgtcgacccaaccagctacgagctgctaaaggctgcctttggtgaacaaaaa
gcattcgatgcggatgaaatcatcgcccgcactatgatcccaatgattatcgaaaccgtt
cgctgtttagaagaaggcattgtggcatcacctgccgaagcggatatgggcttagtctac
ggtttaggcttcccaccattccgtggtggtgtgttccgttacttagatactatgggcgta
gccaactttgtcgccttagctgacaaatacgctcacttaggtggtttgtatcaagtcacc
gacgccatgcgcgcccttgcagccaacaacggtagctactaccaagcctaa
DBGET
integrated database retrieval system
