KEGG   Shewanella sp. LZH-2: JM642_00975
Entry
JM642_00975       CDS       T10525                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
shel  Shewanella sp. LZH-2
Pathway
shel03020  RNA polymerase
Brite
Enzymes [BR:shel01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JM642_00975 (rpoC)
Transcription machinery [BR:shel03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JM642_00975 (rpoC)
DNA repair and recombination proteins [BR:shel03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JM642_00975 (rpoC)
SSDB
Other DBs
NCBI-ProteinID: QRK79738
LinkDB
Position
212280..216497
AA seq 1405 aa
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG
AAELHARVKVRITETVIGDNGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANW
DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL
VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITSAGDSEFLEGEQVEVSRVKIANRDLIEQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq 4218 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggtgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgaactggctagcccagttgcccacatttggttcttgaaatcactg
ccgtcccgtatcggtttaatgctggacatgacgctgcgtgatatcgagcgcgtactgtat
tttgaatctttcgtcgtgatcgagcctggcatgaccagccttgagcgtggccaaatgctg
acagaagaaaactatctggacgcattagaagagtacggtgacgaattcgaagccaagatg
ggtgctgaagcggtattagaactgctgcgcgcaatcgatcttgaaaaagaaatcgaacaa
atgcgtgaagagctgccatcaatcaactctgagactcgtcgcaagaaagtgaccaagcgt
cttaagttgatggaagcgttccacacttctggtaacaagccagagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatctgaacgatctgtaccgccgtgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccggacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttaggtaagcgtgtagactactctggtcgttcggtaattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctggaaggtcgtggcttagcgacaaccatcaaagcggctaagaagatg
gtagagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtgatgcttaaccgtgcaccaacactgcacagactcggtatccaagcgttcgaacctgta
ctgattgaaggtaaagccatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgtaatc
actccatcacaagacgtggtattaggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggtatgtactttatgtctgttgctgaagttgaaaaagcttatgcaactggc
gctgctgaactgcatgcccgcgtgaaagtgcgtatcactgaaaccgttatcggtgacaat
ggtgagcgtactgaacaacgtcgtatcgtagataccacagtcggtcgtgctctgctgtca
ttgattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atttctaagctgttgaatacctgttaccgtcaattaggtctgaaagataccgttatcttc
gctgaccaactgatgtataccggtttccgttttgcaaccatctctggtgcctctgttggt
atcgatgacatggttattccagacgagaaatataccttagttgctgacgctgaagctgaa
gtgctcgaaattcaagagcagttccaatcaggtctcgtaacagctggtgagcgttacaac
aaagttatcgacatctgggcaagtgcgaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagaaaaacaagcttcgttcaat
agcatttacatgatggccgactctggcgctcgtggtagtgctgcacagatccgtcagtta
gcgggtatgcgtggtctgatggcgaaaccagacggttcgatcattgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtacttcagtactttatttctactcacggtgcgcgt
aaaggtcttgccgatactgcattgaagacagcgaactcgggttacctgactcgtcgtctg
gtagacgttgctcaagacttagtcgtcattgaagacgattgtggtactcacgaaggtcta
accatgaagccgctgatcgaaggtggtgatgtggttgagccattacgtgaacgcgtactg
ggtcgtgtggttgctgttgatgtgttctatccaggcaccgaagacgtgcttgcaccacgt
aacaccctgctcgatgaagcatggtgtgacaagttagaagagcattcaatcgatgaagtg
attgttcgttcagtcattacctgtgataccgattttggtgtgtgtgctgcctgttacggc
cgtgatttggcccgtggccatatcatcaaccacggtgaagcgatcggtgttgtggctgca
caatccatcggtgaacctggtacacagttaacgatgcgtacgttccacatcggtggtgct
gcgtcacgtgcctctgcagaaaacaacgttcaagtgaagaactcaggttcgttgaaactg
cacaacgctaagtacgtaacaaacacagacggcaagctggttatcgtttctcgttcttct
gaactggcaatcatcgacgaattaggtcgtgagaaagagcgttataaagtgccttacggt
actgtgcttgaaaagctggaagaagcgtcagttgaagccggtgacattatcgctaactgg
gatccacatactcacccaatcatcactgaagtggcgggtagtattaagttcgttgatatg
atcgacggcgtgaccatgactcgtcaaacagacgaactgactggtctgtcatcaatcgtg
atcctcgacgtgggtcaacgtggttcagcgggtaaagaaatgcgcccaatgatccgtctg
gttggcgccgacggtagcgacctgatgatcccaggtacagaagtaccagcacaatacttc
ttaccaggcagtgcgatcgttaaccttgacgacaacgcgcaaatcgccgtgggtgacgcg
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcacgggtggtctaccacgc
gttgccgacctgttcgaagcccgtaagccaaaagagcctgcaattctggcagaaatctct
ggtaccatctcgtttggtaaagagactaaaggcaagcgtcgtctggtgattacaccagcg
gatggcggtgaacagtacgaagagatgatcccgaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgctgacggtccagaagcggcgcacgacatt
ctgcgtctacgtggcatccacaacgtagctaactacattgtgaacgaagtacaagacgta
tatcgtctacaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgcgtgatcacctctgcgggtgacagtgagttcttagaaggcgaacaagta
gaagtgtctcgcgtgaagatcgctaaccgcgacctgatcgaacaaggtaaagtgcctgcg
accttcgaacgtgaactgctaggtattaccaaagcgtctctggcaacagaatcgtttatc
tctgcagcatcgttccaagaaacaactcgcgtactgacagaagctgccgtaggtggtaag
tctgataacttacgtggtctgaaagaaaacgtaatcgttggccgtctgatcccagccggt
actggttacgcttatcacaagacccgtaatgatgctcgtgctaagaaagacgagccggtt
gtagtgaataagatcactgcaagcgaagcggaacaaaaccttgcagacctcttaaacttg
gctggcagtcaagattaa

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