Shewanella sp. LZH-2: JM642_01430
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Entry
JM642_01430 CDS
T10525
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
shel Shewanella sp. LZH-2
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shel03000
]
JM642_01430
Transcription factors [BR:
shel03000
]
Prokaryotic type
Helix-turn-helix
Other families
JM642_01430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_lid_14
HTH_8
AAA_5
HTH_30
AAA_2
PAS_4
Mg_chelatase
AAA_3
HTH_7
HTH_1
nSTAND6
PAS
HTH_50
HTH_22
AAA_7
PAS_8
HTH_29
Motif
Other DBs
NCBI-ProteinID:
QRK79821
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Position
292935..294794
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AA seq
619 aa
AA seq
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MTVKPHFPTTQAWLADSWQRSLGAGLSEFRAGEDLRLTRAELKHKHEQYQQLIELVQSHA
LPLFNQLMAHSNSRLLLSDADGYVLKHWGVSRYSSKLADVALDIGVNWLEKYKGTNAIGT
ALTAKQAVSVVGEQHFIRQNRFMSCTACPIFSPQGEMLGVLDITSEQQRHSQQTLMLVSS
LAQQVETALLCHLPDSHYRIDLAAEPSLLSSGWQGIVIADSDGRIVGCNPMAKQLLTQAK
LGDSLELHLGDSWARAGGFNRDLALHLQTQALGVTQTKSAKTIQDKPQSQLGVRFRDPLL
ERAWQQANKVITKQIPLLVLGETGVGKEQFVKKLHAQSSRRAQPLVAVNCAALPAELVES
ELFGYQAGAFTGANRTGFIGKIRQAHGGFLFLDEIGEMPLAAQSRLLRVLQEREVVPVGS
NQSVKVDIQIIAATHMDLESLVSQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHR
RHRSGPQTLCTELLAQLMRYDWPGNLRELDNLMQVACLMAEGEVVLEINHLPDYLAQKLM
DLAFEPHTLTEVVDAETTAHPHELSEPSSATIDSLHGTINLNVLQAYRACEGNVSQCAKR
LGISRNALYRKLKQLGIKN
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaaaaccgcattttccaaccacacaggcatggttagccgattcatggcagcgc
agcttaggtgctggcttatcagagtttcgtgctggtgaggatctcagactcacgcgcgcg
gagcttaaacataaacatgagcaatatcagcagctcatcgaattagtacaatcccatgcc
ttaccgctgtttaatcaactgatggcacattccaatagtcgattattgctctccgatgct
gacggttatgtgctgaaacattggggcgtgagtcgttattccagtaagttagctgatgtg
gcgctcgatattggggtcaactggctcgaaaagtataaaggcaccaatgcaataggcacc
gcgctcacggccaaacaggcggtgtcagtggtcggtgagcagcattttatccgccaaaat
cgttttatgagttgtactgcttgcccgattttttcaccccaaggcgagatgctcggagtg
ctcgatatcaccagtgagcaacagcggcattcacagcagactttaatgttagtgtcgagt
ctggcgcagcaggttgagactgcgttgttgtgtcatctgcccgatagtcactatcggatt
gatttagcagccgagccgagtttattaagttctggctggcaaggcatagtgattgccgac
agtgatggacgaattgtgggttgtaatcccatggcaaaacaattgctgactcaagccaag
ctgggcgatagcctagagctgcatttgggagatagctgggcgcgagcggggggcttcaat
cgggatttggccctgcacttacagactcaggcgttgggtgttacgcagaccaaaagtgcg
aagacgattcaagataagccgcagagtcaattgggggtaagatttcgcgatcccttgctt
gagcgggcttggcagcaagctaataaggtcatcactaaacaaatccctttgctggtgctc
ggtgaaactggggtggggaaagagcagtttgtcaaaaagctccatgcccagagctcgcgc
cgcgcgcagccgttagtggcggtgaattgcgccgccttgcccgcagagctggttgagtct
gagttatttggctatcaggcaggggcttttactggtgctaatcgaactggttttatcggt
aagatccgccaagcccacggtggttttttgttcctcgatgaaattggcgagatgccgctg
gcggcgcaaagccggttactccgggtgctgcaggagcgtgaggtcgtccctgttggcagt
aatcaaagtgttaaggtcgatattcagatcatcgccgcgacccatatggacttagagtcg
ctggtgtcgcaggggctgttccgtcaggacttgttttatcgcctgaatggattgcaggtg
cgcttgcctgcgctgcgtgagcggcaggatattgagcgcattatccataaattgcaccgc
cgtcaccgcagcggcccacaaaccttgtgtactgaattattggcgcagctaatgcgttac
gattggcccggcaatctacgggagctggataacctaatgcaggtggcgtgtttgatggcc
gaaggtgaggttgtactcgagatcaatcatctccccgattaccttgctcaaaagctaatg
gatctggcgtttgagccgcacacattaactgaggttgtcgacgcggaaaccacggcgcat
ccgcacgaactgtccgagcctagctccgccaccatcgactcgctccatggaaccataaat
ctgaacgtgttgcaggcttaccgcgcctgtgagggtaatgtgagccaatgtgctaagcgt
ttggggattagtcgtaatgccttgtatcgcaaattaaaacagctagggattaagaattaa
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