Shewanella sp. LZH-2: JM642_04360
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Entry
JM642_04360 CDS
T10525
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JM642_04360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shel03019
]
JM642_04360
Enzymes [BR:
shel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JM642_04360
Messenger RNA biogenesis [BR:
shel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JM642_04360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QRK80356
LinkDB
All DBs
Position
complement(946172..947788)
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AA seq
538 aa
AA seq
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MSFSALGLSAPLQKAVSEQGYDTPSPIQVQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL
ELLAKGQKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL
RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ
NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQ
ENWQQVLVFSRTKHGANRLAKSLIQADISAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVCSEEIKLLKDIER
LINRVLERQEVAGFGPVHALPETTLTPQGKNHKVKAVASQRKHRSAGKPAPRSGSGRDVS
QTSSVRDGCHDKHSTPSRNSNEHHNTEAAVARSPKPKSKHPQRDGGTTNSATAGNNAKAK
PHSGAQQRSHAERSDKSNNDGRRQEQPKGRNPHSVKPASNEPKQHSHRADNRPNRVKP
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttccgccttaggtttatccgcaccactccaaaaagccgtatccgaacagggc
tatgacacgccatctcccatccaagtgcaagcaattccagctgtactaacgggcaaagac
gtcatggctgcggcccaaacggggacaggaaaaaccgcaggttttacgctgccattactg
gaattactcgctaaaggccaaaaagccaagtcaggacaaactcgcgccttagtcttaact
cctacgagggaactggcggcacaagttggcgaaagtgttgaaacctatggtaaatatcta
ccactgcgttccgcggtggtctttggtggcgtgcctatcaacccgcaaatcaataaatta
cgtcatggtgttgatgtgttagttgccacaccagggcgactattagatcttgtgcaacaa
aatgcggtgaagtttaatcaacttgagatcttagtgctcgacgaagcggatcgtatgttg
gatatgggctttatccgtgatatcaaaaaaatccttgcactcttacccgctaagcgacaa
aacctgatgttttcagccaccttctccgatgagatccgtgagcttgcaaaagggttagtc
aatcatccggttgagatttccgtcacgccgcgcaatgccgccgcaacgacggttaagcaa
tggatttgccccgttgataaaacgcaaaaatcagccctgctgatccaactcatcaaacag
gaaaactggcagcaagtgttagtgttttcgcgtactaaacatggcgcaaaccgactcgcg
aagagccttatccaagccgacattagcgctgccgcgatccacggtaataaaagccaaggt
gcgcgcactaaagccctcgccgactttaagagcggtgaagttcgcgtattggttgcgacc
gatattgccgcccgcggtttagatatcgatcagttaccgcaagttgttaactttgattta
cctaacgtgcctgaagattatgtgcatcgcattggccgtaccggccgtgctggcgccaca
ggccaagccgtttcattagtctgcagcgaagaaattaaactgcttaaagatattgagcga
ttaattaaccgcgtgctcgagcgccaagaagttgcaggttttggcccagtgcatgcgctg
cccgaaacaacgctcactccccaaggcaaaaatcataaagtaaaagccgtggcaagccag
cgtaaacaccgcagtgcaggaaaacctgccccacgatctggttctggccgtgatgtgtct
caaacatcaagcgttcgagatggctgccacgataagcacagcacgccatcacgcaacagc
aatgaacatcataataccgaggcagcagttgcacgctcgccaaaaccaaagagtaagcat
cctcagcgcgatggcggcacaactaacagtgcaacggcggggaacaatgcaaaagcgaaa
ccgcattcaggtgcacagcaacgtagccatgcagaacgaagcgacaaatcaaacaatgat
ggacgccgccaagagcagcccaaaggccgcaatccacacagtgtaaaaccggcttcgaat
gagccgaaacagcactcacatcgcgcagataaccgcccgaatcgtgttaagccttaa
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