KEGG   Shewanella sp. LZH-2: JM642_07965
Entry
JM642_07965       CDS       T10525                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
shel  Shewanella sp. LZH-2
Pathway
shel03030  DNA replication
shel03430  Mismatch repair
shel03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:shel00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JM642_07965
   03430 Mismatch repair
    JM642_07965
   03440 Homologous recombination
    JM642_07965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shel03032]
    JM642_07965
   03400 DNA repair and recombination proteins [BR:shel03400]
    JM642_07965
Enzymes [BR:shel01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     JM642_07965
DNA replication proteins [BR:shel03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     JM642_07965
DNA repair and recombination proteins [BR:shel03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     JM642_07965
SSDB
Motif
Pfam: RNase_T CAF1
Other DBs
NCBI-ProteinID: QRK81002
LinkDB
Position
1780038..1780715
AA seq 225 aa
MGAWLINAKLQWRALRCQHQLFKDYYQSLIPLMALPINRAPLMAMDLEMTGLDPLQDQIL
SIGLVPIENGVIPLGEAQQKLVQIKGSVGQSATIHGILDNHLIQAVSIEEAMAWFIAQTR
GRVLVAHHSPLDCRFLQQDILAIYHQAVSLPAIDTLVLEKQRLLREHSVLKEGSLRLGAC
RERYHLPIYGAHSALTDALACAELLLAQVAAMGGGADISVGDLLT
NT seq 678 nt   +upstreamnt  +downstreamnt
atgggcgcttggttgattaatgctaagttgcaatggcgagcactgcgctgtcagcatcaa
ttatttaaggattattatcagtccttaatcccgctgatggcgctgcccatcaatcgtgct
cccttgatggcgatggatttggagatgacagggttagatccccttcaggatcaaatctta
agcattggcttagtccccattgaaaatggagtgatcccccttggtgaggcgcagcaaaaa
ttagtgcaaattaagggcagtgtcggccaaagtgcgacgattcatgggattctcgacaac
catttaatccaagctgtgagcattgaggaggctatggcatggtttattgctcaaacccgt
ggccgagtattagttgcccatcactccccactggattgtcgttttttacaacaagatata
ttggctatctatcatcaagccgtttcactccccgctatagataccttagtacttgagaaa
cagcgattattacgcgagcattcggtacttaaagaaggaagtctaaggcttggggcctgt
cgagagcgttatcacttaccgatttacggtgcccatagcgcattaaccgatgcgttagct
tgtgcggagttattattagcacaagtggcggccatggggggaggtgcagatatttcggtc
ggggatttactgacctaa

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