Shewanella sp. LZH-2: JM642_08195
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Entry
JM642_08195 CDS
T10525
Symbol
msbA
Name
(GenBank) lipid A export permease/ATP-binding protein MsbA
KO
K11085
ATP-binding cassette, subfamily B, bacterial MsbA [EC:
7.5.2.6
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
JM642_08195 (msbA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shel02000
]
JM642_08195 (msbA)
Enzymes [BR:
shel01000
]
7. Translocases
7.5 Catalysing the translocation of carbohydrates and their derivatives
7.5.2 Linked to the hydrolysis of a nucleoside triphosphate
7.5.2.6 ABC-type lipid A-core oligosaccharide transporter
JM642_08195 (msbA)
Transporters [BR:
shel02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
JM642_08195 (msbA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_22
DEAD
AAA_16
RsgA_GTPase
nSTAND3
ABC_ATPase
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
QRK81041
LinkDB
All DBs
Position
1828306..1830111
Genome browser
AA seq
601 aa
AA seq
DB search
MTAYPKDEMWTVFKRLLAYLKPMKGMFLLSVAGLIVYGLVDAAFISFIGPFIDKGFSSST
PAITNGIALPTNQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQ
QVFQHYLSLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDGVTVIGMLGLMFY
NSWKLSLCILVIGPIMGLVMTIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGG
QETETARFAKINDRNRHQNMKLAIAQAISQPLIMVIGSFALAFVLYAASLDSMKADLTAG
TFATILGAMMAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTLPESDTGTYTVKRAKGNL
RFDNVSFSYEGQERRALDKIDFEVSQGQTLALVGRSGSGKSTIASLVTRFYTGLASGDIL
LDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAME
FIEQLPDGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQ
GLDNLRHNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQFG
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatatcctaaagacgaaatgtggaccgtattcaagcgattactggcctatctc
aaaccgatgaagggcatgtttttgctttcagttgctggccttattgtgtatgggcttgtc
gatgcggcttttatttcttttattggcccttttatcgataaagggttttccagcagtaca
ccagcgataactaacggtattgcactccccacgaaccaaggctttcatgccgataaccaa
gtgctattaatggcgcctatcgtggttattttaatgttctccctgcgcggctttgcaaac
ttcgtatccacctacggcatttcttatatgagcgctaggttaattatggatatgcgccag
caagtgtttcaacattatctaagtttacccgtgagttacatggataaggaaaacacgggc
aatttaatttcaaaagtgaccttcgataccgagcaaattgcccgtgcatcgggcagtgcc
ttgatttcgattgttcgtgacggtgtgaccgttatcggtatgctgggattgatgttttat
aactcttggaagctttctctgtgtattttagtgattggtccgattatgggattagtgatg
actattgtgagtcgccgcttccgtaaggtgtcgaaacaaatccaaacggcgatgggggat
gtcagtgccgcaacggagcagatgatcaaaggtcataaaaacgtactggcctttggtgga
caagaaacagaaacggctcgctttgccaaaattaatgacagaaaccgtcatcaaaatatg
aaacttgcgatcgcacaggctatcagccagccgcttatcatggtgattggctcctttgcc
ttggcctttgtgctgtatgcggcgagcctagatagtatgaaagccgatttgaccgcaggt
accttcgcgacgattctgggcgcgatgatggccatgctgcaacccatcaaaaacctcacg
cgtgtgaatgccgaatttcaacgtggtattgcagcgtgcaccacagtatttgaactgtta
gacactttgccagaatcggatactggtacttataccgtcaagcgtgctaagggcaactta
cgttttgataatgtttcctttagttacgaaggccaggagcgccgcgctttagataaaatt
gactttgaagtgtcccaagggcaaaccttagccttagtcgggcgctctgggtcggggaag
tcgacgatcgcaagcttggtgactcgtttttacaccggactagcgtctggcgatattctg
cttgatgatgtgagtatttatgattactcattgaaatcattacgtagtcaagtggctttg
gtatcgcagcaagtgacactctttaacgatactattgccaataatatcgcctatgcctat
ccgggcgaagtcacccgcgagcagattattgaggcggcgaccttagctcatgcgatggaa
tttattgagcaattgcccgatggcttagatacccaagtcggtgaaaacggcgtgctattg
tcaggcggtcagaggcaacggattgcgattgcgcgggcaatgttacgtgatgcaccagtg
ctcattctggatgaagcgacatcggcccttgatactgaatctgagaaagcgattcagcag
ggattagacaatttacgccataaccgcacctcggttgtgattgctcaccggttatcaacg
attgaaagtgccgatcaaattttagtggtcgatcaaggtcgcatcgttgagcgtggcacc
cacaaatctctactcgaacttggcggcatgtatgccaagttataccaaatgcagtttggt
agctaa
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