Shewanella sp. LZH-2: JM642_08280
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Entry
JM642_08280 CDS
T10525
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JM642_08280 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shel03019
]
JM642_08280 (rne)
03009 Ribosome biogenesis [BR:
shel03009
]
JM642_08280 (rne)
Enzymes [BR:
shel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JM642_08280 (rne)
Messenger RNA biogenesis [BR:
shel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JM642_08280 (rne)
Ribosome biogenesis [BR:
shel03009
]
Prokaryotic type
rRNA processing factors
JM642_08280 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QRK81058
LinkDB
All DBs
Position
complement(1845852..1849130)
Genome browser
AA seq
1092 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPAGMGLIVRTAGVGKESTEL
KWDLKVLQHHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTP
DYRVIRHRTDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFAAPQKVEQDTAPV
AKVETAQPGFFSKLFSAIGAFFSSSDNAVAEKSTETKKQDSQATNANRRNRRNDTRRTRN
PQDTEKAKEGTREPRTRNAKKVADAPQAQERPIREKDESAKRAKPEPKPRNQAVKEVIAD
VQDEAPKQEVVRERRQRRNMRRKVRIDNTTDVVETSIQEEAILAELVAINADVTVEVQPE
VKAPRRRQPRKEVTVANEVGDTTVSEAADVVETKPADAIVDMPVVESQADTQVDAKLDTQ
PAAIDEDNAEANVDADDKAKRESRDGQRRSRRSPRHLRAAGQRRRRDEDEQGTTAPAQFI
PNDALGEDQDYPAPTAVVETANLTEQTVAETVAVEVKSTATQPAPIVHTADVISSTEAAV
SQSIATESTVSDTTVTESSAEIKSNAVVAEVTSEPVVNDKAAETVKASDAEPQSATEPAV
QATEVMQIVTDITPEAKAEEVTPVTEKTEPKEAVKSVASAPMAKPAAFVKPQAKPVMAQA
ATAQPTEVVVSKPKASSRFGAMVSSEMTKPTVEVRAQVEVPKGREYENTATAEATEPKLK
HSNSAESDMARP
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgccctcgttgac
gggcaacaactgtacgacctcgatattgaaagtcctggtcatgagcaaaaaaaatcaaat
atttacaagggtaagatcacccgcgtagagccctctttagaagccgctttcgtagactat
ggtgctgatcgtcacggctttttaccattaaaagaaattgccagagaatatttccctaaa
ggttattcattccaaggtcgcccaaacatcaaagaagtcgtcagtgaaggacaagaagtt
attgttcaaattgacaaagaagaacgtggcaacaaaggcgcggcattgaccacctttatc
agccttgctggttcttacttagtgttaatgccaaacaacccacgtgcaggcggtatttct
cgccgtatcgaaggggatgagcgcactgaattaaaagaagctatggccgatttagaagtc
cctgctggtatgggccttatcgtccgtaccgctggtgtgggtaaagagtcgacagagctg
aagtgggacttaaaagttctgcaacaccactgggcggcgatcactgaagcggcgcaaacc
aaaggcgcacctttcctcattcaccaagaaagcaacgtgattgttcgcgccattcgtgac
tatttacgccgtgatgtcggggaaattttaatcgaccatccacgtattttcgaagaagct
aaacagcatatcgcacttgtgcgcccagattttgttgaacgtgtaaaactctacgaagct
gaagtaccgttattcactcacttccaaatcgagtcgcaaatcgaatcggcgttccaacgt
gaagtacgtctgccatcgggtggttcaatcgtcattgatccaactgaagccttaacctct
atcgatatcaactctgcccgtgccaccaagggcggcgatatcgaagaaaccgcattaaat
accaatcttgaagccgccgatgaaattgcccgtcaattacgtctacgtgacttaggtggc
ttagtggttattgactttattgatatgacgccagtgcgccatcaacgtgaagtcgaaaac
cgcctacgtgatgccgtacaccatgaccgcgctcgcgttcaattaggtcgtatttctcgt
ttcggcttgatggaaatgtcacgccagcgtctgcgtccatcattagaagaatccgctgca
catatctgccctcgctgtcatggccaaggcactatccgcagtactgaatctttagcgttg
tcgattctgcgtttgatggaagaagaagccatcaaagaaaatacctcacaaatcgaagcc
attgtgcctgtcgatgtggctgcattcctgcttaacgagaaacgtaaagcgattcgtatc
accgaacaacgccatgacgtggaagtctatgtgatcccagatccacatatgatgacccca
gattatcgcgtgatccgtcaccgcaccgacgatgaaatcgatgaatccagctacaagcgc
atcgaacagcctgaagcaaaattgtacgagccacgtaaactggaacgtactgcggcgcca
gctccagccctaaaaggctttgctgctccacaaaaagtggaacaagacactgcaccagtt
gccaaagttgaaaccgcacagccgggtttcttcagtaaactcttcagtgcaattggtgct
ttctttagctcaagtgataacgcagtcgcagaaaagagcacagagactaagaagcaagac
agtcaagccacgaatgccaaccgtcgcaatcgtcgtaacgacactcgccgtactcgaaat
ccacaagatactgaaaaagcgaaagaaggtactcgcgaaccacgtactcgtaatgccaaa
aaagtcgccgatgcaccacaagctcaagagcgcccaatccgtgaaaaggatgaaagtgcg
aaacgtgctaagcctgagcctaaaccccgcaatcaagcagttaaagaagtgattgcggat
gttcaagacgaagcaccaaagcaagaggtcgtccgtgaacgtcgtcagcgccgtaatatg
cgccgtaaagttcgtatcgacaacaccacagatgttgtagaaacgtcaattcaggaagaa
gcgattttagctgagttggttgcaatcaatgcggatgtcacggtagaagttcaaccggaa
gtgaaagcgccgcgccgccgccagccacgtaaagaggttacggttgcaaatgaggtcggc
gacaccacagtatcagaagctgctgatgtcgtagaaactaagccagccgatgctattgtt
gatatgcctgttgttgaaagccaagcagacactcaagtggatgctaagttagacactcaa
ccagcggccattgatgaagataacgccgaagcaaatgttgatgcagatgacaaagccaaa
cgtgaatcccgtgatggacaacgtcgtagccgccgtagtcctcgccatctgcgagctgct
ggccaacgccgtcgccgcgatgaagatgaacaaggcacaacggctcctgcgcagttcatt
cctaatgatgcattaggcgaagatcaagactatccagcaccaactgcagttgttgaaacg
gctaacttaacagagcaaaccgtggctgaaacggttgcagttgaagtgaagagtacagca
acgcagccagcgcctattgtgcacactgctgatgtgatctcctcaactgaagccgcagtc
tctcaaagcatagcgacagaaagcacggtatcagataccacagtaactgaatcctccgcg
gaaattaagtctaatgctgttgtcgctgaagttacatctgagcctgtagttaacgataag
gccgctgaaacggttaaagcatctgatgccgagccacaatcagcaacagaaccagcagtg
caagccacagaggttatgcaaatagtgactgatataactcctgaagcaaaagccgaagaa
gtgacaccagtgacagaaaagactgagccgaaagaagcggtaaaatcagtcgcatcagca
ccgatggcgaaacctgcagcgtttgttaaacctcaggcaaaacctgtaatggcgcaagct
gctacggctcaaccaacggaagttgtcgtcagcaaaccgaaagcgtctagccgttttggt
gctatggtatcatctgaaatgactaaaccaacggtagaagtcagagcgcaggttgaagtg
cctaaaggccgtgagtatgaaaataccgccaccgctgaagccactgaacctaagctgaaa
cacagcaatagtgctgaatcggatatggctcgtccatag
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