Shewanella sp. LZH-2: JM642_09140
Help
Entry
JM642_09140 CDS
T10525
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
shel Shewanella sp. LZH-2
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shel03019
]
JM642_09140 (hrpA)
Enzymes [BR:
shel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JM642_09140 (hrpA)
Messenger RNA biogenesis [BR:
shel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JM642_09140 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
nSTAND_NTPase5
WHD_HA2
SLFN-g3_helicase
PhoH
T2SSE
NACHT
TsaE
NTPase_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QRK81216
LinkDB
All DBs
Position
2039363..2043244
Genome browser
AA seq
1293 aa
AA seq
DB search
MVLNSDKHPLSSAFLQQCFQSDASRIRRRLFKLHKEADSDKKTQELAKLTEQAQAAFEKV
EQRLKARPKINYPDNLPVSSMREDIAKAISENQVVIIAGETGSGKTTQLPKICLELGLGS
RGFIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAE
LTSDRYLDQYDTIIIDEAHERSLNIDFILGYLKQILKKRPDLKIIITSATIDVERFSKHF
NNAPIIEVSGRTYPVETRYRPLLQDTEADLDQIEGIFAAVDELVAEGLGDILIFMNGERE
IRDTAEQLNRRNYRDTEILPLYARLSYGEQSKVFSSHTGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPA
FTDPEILRTNLASVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKDNI
VLTPLGRQLSQIPVDPRLARMVVESHQLGCLNEVLVIASGLSIQDPRERPMDKKQASDEA
HRRFADPQSDFVSWVNLWQHLKEQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQA
VHDLKWRLNDTPANYDALHRALLSGLLSHIGFKDNNNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAELMETSKLFARCCAKIEPEWLEPLAAHLIKKNHLEPHFEAKQGSVIAFENQVLY
GLTVVHRRRVQYGPINPVEAREIFIRSALAEGQLQTKEAFFIANQKLLKDVEALEHKSRR
RDILVDEQVLMDFYEPRIPEGIYNASKFFSWWKEARRTQPDLLDFNKSLLMQRSADHISA
LDFPDTWHKGNIRLQLSYHFDPAASDDGVSVHIPVALLNQIDDTDFDWLVAGMREEKCVA
LIKSLPKGLRRNFVPAPDYARACVQAMQPFSASLLEAMCKQLLRMSGTRVNPEDFDVSQM
PVHLLMNFKIEDDKGKLVAQGRVLDTLKAELQGVVAKAIRQVADKGIEKEALTEWSFGDL
PKQFEQRKGNYQVRAFPALIDNKDSVAIKLFDDEFEAQAAHRQGLRRLLLLNIPSPVKHL
QQALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRDAAQFDAAKDWVRQEL
NPTAEQIALKVEQILTLYQGIKKRTKGKISLDIAFAMSDIQSQLDQLVFKGFVEACGWKR
LADVARYLKAIEIRIDKLPVDPTRDRLHMQSITKVQEALAAQLAKVPRSQPVPAALIEAR
WMIEEYRVSCFAQALGTAYPISEKRILNHILLS
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttggttttgaactctgacaaacatccgctatcgagcgcctttctccagcagtgctttcaa
agtgatgcctcgcggatccgccgccgtttatttaagctccataaagaagccgattctgac
aaaaaaacacaagaattagccaaacttactgagcaggcgcaagcagcgttcgagaaagta
gagcagcgcctgaaggctcgccctaagatcaattatcctgacaatctgcccgtcagtagc
atgcgcgaagacatcgccaaagccatcagtgaaaaccaagtggtgatcattgcgggtgaa
accggttcgggtaaaaccacgcagctgcctaaaatctgtttagaactgggcttaggcagc
cgtggttttattggtcatacccagccgcggcggttggcagcgcgcagtgtcgcgtcaaga
gtggctgaagaattacaaagcccgctcggtgaagtcgtgggctttaaggtgcgttttgcc
gatgcgcttaagagtgaatcctatatcaagctgatgaccgacgggattttactggcggag
ctgacttcagatcgttatttagatcaatacgatacaatcatcatcgacgaggcgcatgaa
cgtagccttaacatcgattttatccttggttaccttaagcaaattcttaaaaaacgcccc
gatcttaagatcatcatcacctcggcgaccattgatgttgaacgtttctctaagcatttc
aataatgcgccgattattgaggtgtcagggcgtacctatccggtcgaaacccgttatcgc
ccattgttacaagatactgaggccgatctcgaccaaatcgaagggatttttgccgccgtt
gatgagctggttgccgaaggtctaggcgatattttgatctttatgaacggtgagcgtgaa
attcgtgataccgcagagcagctaaatcggcgcaattaccgcgataccgagattttgccg
ctctacgcgcgtctctcctacggcgagcagtccaaggtctttagtagtcatacagggcgt
cgtatcgtgcttgcgactaacgtagcggaaacctcgctgactgtgccgggtattcgttac
gtgattgacccaggaacagcgcgcatcagccgttatagctatcgcactaaggtgcagcgt
ttgccgattgagcctatttcacaggcgagtgccaatcagcgtcaaggccgctgcggccgt
gttggcccagggatttgtattcgtttatacgatgaggcggattttaataaccgcccagcc
tttaccgatcccgaaatcttacgaaccaatttggcgtcggtgattttgcaaatgctcgcc
atcgggcttggtgatatagctgctttcccgtttattgagccgcccgatccgcgccatatt
cgtgatggcttcttactgcttgaggaattacaggcggttaagcagcagaaggacaatatt
gtgttaacgccgcttgggcggcagttatcgcaaatccccgtcgatccacgtttagcgcgt
atggtggtcgaaagccaccaacttggttgcttaaatgaggtgttagtgatcgcctctggg
ctgtctattcaagatccccgtgagcggcccatggataaaaagcaggcgtccgatgaagcc
catcgccgctttgccgatccccagtctgattttgtcagttgggtaaacttatggcagcac
ttaaaagagcaacaaaaggaattatccgccagtcagttccgtaaaaaatgtcgtgatgaa
tatttagcctacctgcgtgtgcgcgaatggcaggatttatatactcagctaaaacaagcg
gttcacgacttaaaatggcgcttaaacgacacgcctgcgaactacgatgcgctgcaccgt
gcactgttatcgggtctgctcagccatattggctttaaggacaataacaacgaatactta
ggcgcgcgtaatcgtaagttttttgtgttccccggctctccgttggctaagaaaggccct
aagtggattatggcggcggagctgatggaaacctctaagctgtttgcccgctgctgcgcc
aaaattgagccagagtggctcgagccgttagcagcacatctgattaaaaagaatcaccta
gagccacattttgaggcgaaacagggcagtgtgatcgcctttgagaatcaagtgctttac
ggtttgaccgtggtgcatcgccgccgcgtgcaatatgggccgattaatcctgttgaagcg
cgggaaatctttatccgtagcgcgctcgccgaagggcaattacaaaccaaagaagccttc
tttatcgctaaccaaaagttattgaaggacgtcgaagcgctcgagcacaagtcccgtcgc
cgcgatattttggtcgatgaacaagtgttgatggacttttacgagccgcgcattcccgaa
ggcatctataacgcgtctaagttctttagctggtggaaagaagcgcgccgaactcaaccc
gatttactcgattttaataagtcactattgatgcagcgcagtgccgatcatatctcggcg
ctcgatttccccgatacttggcacaagggcaatattcgtttgcaactgagttatcacttt
gatcctgcggcgagtgatgatggcgtctctgtgcatattccagtggcgctactcaatcaa
atcgatgatacggatttcgattggctagtggcgggaatgcgtgaggagaaatgtgtcgcc
ctgattaagtctttacctaaggggctgcgacgtaactttgtgcctgcgcccgattatgcc
cgtgcctgcgtgcaggcgatgcagccctttagcgccagtttactcgaggccatgtgcaaa
cagctgctgcgtatgagtggcacgcgcgtcaatcctgaagattttgatgtttcgcagatg
ccagtgcatttgctgatgaactttaagattgaggatgacaagggcaagttagtggcacag
ggacgggtactcgataccttaaaggccgagttacagggcgtggtcgctaaggcgattcgt
caagtagcggataagggcattgagaaagaagcactcaccgagtggtcctttggcgactta
cctaagcaatttgagcagcgtaagggtaactatcaagtgcgggctttccccgcattgatt
gacaataaagactcagttgccatcaaattatttgatgatgaatttgaggcgcaggcggcg
catcgtcaaggtctacgtcgcttgttgttactcaacattccttcacctgtaaaacacctg
caacaggcgctgcccaacaaggccaaactggcgatgtatttcaatccatttggccaagtg
caaattttaattgatgacattattgccgcagccgtgcagcaattgctcgatgaaaaggcg
ctggatgtgcgcgatgccgcccagtttgatgcggccaaggattgggtgcgccaagagctg
aatccaactgcagagcaaatcgccctaaaagtggagcagattttgacgctctaccaaggc
attaaaaagcggactaagggtaaaatcagcttagatatcgcttttgcgatgagtgatatt
caaagccaattggaccaattagtctttaaggggtttgttgaggcctgcggttggaagcgt
ttagccgatgtggcgcgttacttaaaggcgattgaaatccgcatcgataaattacctgta
gacccgacccgtgaccgcttgcatatgcagagtatcactaaggtgcaagaggctttagcg
gctcaacttgctaaggtgccacgctcacagcccgtgcctgcggcattgattgaagcccgt
tggatgattgaagagtaccgggtgtcttgctttgcccaagcgctgggaacggcttatccc
atctcggaaaagcggatcttaaaccatatcctgctgagttaa
DBGET
integrated database retrieval system
