Shewanella sp. LZH-2: JM642_09240
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Entry
JM642_09240 CDS
T10525
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JM642_09240 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shel03400
]
JM642_09240 (recC)
Enzymes [BR:
shel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JM642_09240 (recC)
DNA repair and recombination proteins [BR:
shel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JM642_09240 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QRK81234
LinkDB
All DBs
Position
complement(2064974..2068747)
Genome browser
AA seq
1257 aa
AA seq
DB search
MLKLIQSNQMEVLCAHLAAYLRQPLPGTALLQSEHILVQSPGMSTWLRLEIAKQNGIAAA
LEFPLPSSFIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLEEESFGPLRHYLGHME
SSSPDSSTTNNQLEASNSIAADNIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLDAL
KLNEEQRWQPILWRALIAFNRDELRQSHYHRANLHQDLIAALADSTHSIAKLPERLFVFG
ISSMAPQTIDVLHQLAGRIDVIILNLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWE
DKLEVGNPLLANNGKMGRELLDMLLELPPEHCDFGDDVYCEPCGDPNDPHSNASMLAGVQ
YDILEMQTLDRVLGPDAELYQDVANRRVLKNSDHSIQIKSCHSPLREVETLHDHLLDLLD
RDNQLTPKDIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLL
NINQSRFGLTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRVKQGVPA
FEQNSWAFGIKRLILGYALRDDAPLYQASPQAPSYLVVSGVEGQSAQALGKLLNFIEVLD
ETTLQLAQPQAPCQRLFELTELLNAFYDPDEDEREQLQEIRDAIATLEQELLAASPANSY
TTAYDVNPNFLDQSGLHSNALNLSIEVLAQWFNQRLTESRVGQRYLAGSVNFCTLMPMRS
IPFKVVCLLGMNDGIYPRMQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLY
ISYIGRSERDNSERIPSMLVSELIEYCQLCYVPESLTAETPAVGNEAAQQALLETIISHQ
PLQPFDPKLYQSTEPQAQAIKQSYSQQWCPPDISTQSLQRRFIDANTLIVLEDDTIGDND
IQQDVEPLSEEDHVDISAFIRFFRNPAQYFFNRTLKVDLNLNIQADDNDEPFSLNALERY
LLQARLLDDALEQGAEQGQAQPSSELLQRLKASGNLPMQPFDDLLLRQYSHDIAPLVGRT
LFMRGDVSPRHADIRLAFELPHQNAGNQVKTKRVILEGRIDDISPKGLVSCRPGSAHGRD
ILALYLRHLCLMAAGLTQPSDHLQPSYLLDMGHFHALSPIAPKQAHDQLAHLLQYFYQGQ
LHPLCFMPKTSLAYASAEINEDETSQLDGQHDSQHSVRLEAAQSEWLDEQGELGEGTDPH
YQRLFRFPQDFTEANFGKLADEIYRPMLSLYHKDTLAQLEEFVLNAEPQAATSEGAQ
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttaatccaatccaaccaaatggaagtgctctgtgcccatctcgctgcatat
ttgcgccaaccactacccggcacggcgttattgcaaagcgagcatattttggtgcaaagc
cctgggatgtcgacttggttacgccttgaaattgcaaaacaaaatggcattgccgccgcg
cttgagttccctttgccctccagttttatttggcaactgtgccacgatttactccccaat
gtccccaaggaaaacgcctttactaaagcggcaatgacctggaaattaatgcagctactg
cctcgcctacttgaggaggaatcctttgggccactgcggcattatttaggtcatatggag
tcaagcagccccgactcgagcacaacaaataatcaacttgaagcgtcaaactcaattgcc
gccgataatattaagctttatcagctctgcggccgtatcgccgatatcttcgaccaatat
ttagtttaccgccccgactggattgccgcatgggaagctaatgaaccactcgatgcactc
aaattaaatgaggaacaacgctggcaacctattctttggcgggcgctgattgccttcaac
cgtgacgagctgcgtcaaagccattaccacagggccaatttacatcaggatttaattgcc
gcgctggcagatagcacccattccattgccaaattgcctgagcgtttatttgtgtttggc
atttcgtctatggccccacaaaccatagacgtgctccaccagctcgcgggccgaattgat
gtcatcatccttaacctcagcccctgccaacattattggggcgatattatcgacccacgg
catcgagcgcgaatggcgttgcaatatgcaggcaaacgccaattggccgagcaatgggaa
gataaactcgaggtcggcaatccgctgcttgccaacaatggcaaaatgggacgcgaatta
ctcgatatgctgctcgaactcccgcccgaacactgcgattttggcgacgatgtgtactgc
gagccctgcggcgatcctaacgatccgcatagcaatgccagcatgctggctggggtgcaa
tacgatatattagaaatgcaaaccctcgaccgcgtactcgggcctgatgccgagctatat
caagatgttgccaatcgaagagtgttaaaaaacagcgaccattcgattcaaatcaagagc
tgccacagcccgctgcgcgaagtcgaaaccttgcacgatcatttactcgacctactggat
cgcgacaaccaactcacgcccaaagatattgtggtaatgatgccagatgtcgccgcctac
gcgccctatatcgatgcggtgtttgctgccaaacaggggctcgaatatatcccctacgcc
attgccgaccgcggcgcggcgcaggaatcgccactcattaatagctttttgaatttactc
aatattaatcagagtcgcttcggactgaccgatattttaagcattctagaagtgccagcg
attttacggcgttttcaactcgaagaagacgagctaccactgatccgccgttggttagat
gaagccggtgtgcgttgggggcgcgatgagcaaagccgtgttaaacagggagtgcccgct
tttgagcaaaattcctgggcctttggcatcaaacggttaatcttgggctatgccttaagg
gacgatgcccccttgtatcaagcaagcccacaggcgccgagctatttagtggtatcaggg
gtggaaggccaatcggcgcaggcccttggcaaactgttgaactttattgaagtcctcgat
gaaaccacgctgcaattagcccagcctcaagcgccttgccagcgtttatttgaactgact
gaactgttaaatgctttttacgaccccgatgaggatgagcgtgaacagttacaggaaatc
cgcgacgccattgctaccttagagcaagagttactggccgccagccctgctaacagctat
acaacggcatacgacgttaaccccaattttttagaccaaagcggcttacactcaaacgcc
ttaaacttaagcatcgaagtactcgcacaatggtttaatcaacgcttaaccgagtcacgg
gttggccagcgttatctggcgggtagcgtaaacttttgtaccttaatgccgatgcgctcg
attccatttaaggtggtgtgcctgctcggcatgaatgatggcatatatccgcgcatgcaa
catcctgtgggctttgatctgatggcacattttggtgctcgcaaaggcgatcgctcccgc
agattagacgataggtacttgtttttagaagcactactctcggcacgggaacagctttac
atcagctatattggccgcagtgagcgggataactcggagcgcattccctctatgttagtc
tccgagctgattgaatattgccagctgtgttatgtgccagaatcgcttacagcagaaact
ccagctgtgggtaatgaagccgcccaacaggcattgcttgagacaattataagccaccag
ccgctgcaaccttttgatcctaaactgtatcagtcaacagagccgcaagcgcaggcgata
aaacaaagttacagccagcaatggtgcccaccggacatcagcacgcaatcactccagcgt
cgttttattgatgccaacacgctgattgtgctcgaagatgacacgattggggataatgat
attcaacaagatgttgagccactaagcgaagaagaccatgtcgatatctccgcttttatc
cgattctttcgcaatcccgcacaatatttctttaaccgcacactaaaggttgatttaaac
ctgaatattcaagcggatgataatgatgagccctttagcctcaatgcgcttgagcgttat
ctgttacaggcaaggttgctcgatgatgcgcttgaacaaggcgctgaacaaggacaggcg
cagcccagtagcgaactattacaacgcttaaaagccagtggtaatttacccatgcagccc
tttgatgatctgctgctgcgccaatatagccatgatatcgcgccgcttgtcggcagaacc
ttatttatgcgtggcgatgtctccccgcgccatgcggatattcggctcgcctttgagtta
cctcatcagaacgcagggaatcaggtaaaaaccaagcgcgtgatcctcgaaggtcggatt
gatgatatcagtccaaaaggcttggtcagttgtcgccccggcagtgcccatgggcgggat
attttagcgctgtatctgcgccatttatgtttaatggccgcaggactaactcagcctagc
gatcatctacaacctagctatctactcgatatggggcattttcacgccctctcgccgatt
gcgccaaagcaggcccatgatcaactggctcacttgttacagtatttttatcagggacag
ttgcatccgctgtgttttatgcccaaaacctcccttgcctacgccagtgcagagatcaat
gaggatgaaaccagtcaacttgatggccagcacgatagtcaacacagtgtgcggctagag
gcggcgcaaagcgaatggctggacgaacaaggtgagcttggcgaaggcaccgatccccat
taccagcggctatttcggtttccgcaggatttcaccgaagcaaattttggcaaactggcc
gacgagatctatcgacccatgctgagcttgtaccataaagacaccctcgcccaacttgag
gagtttgtgctcaatgcagaaccacaagccgccacatcagagggagcgcagtaa
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