Shewanella sp. LZH-2: JM642_09580
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Entry
JM642_09580 CDS
T10525
Symbol
fadD
Name
(GenBank) long-chain-fatty-acid--CoA ligase FadD
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel00061
Fatty acid biosynthesis
shel00071
Fatty acid degradation
shel01100
Metabolic pathways
shel01212
Fatty acid metabolism
shel02024
Quorum sensing
shel04146
Peroxisome
Module
shel_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
JM642_09580 (fadD)
00071 Fatty acid degradation
JM642_09580 (fadD)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
JM642_09580 (fadD)
09145 Cellular community - prokaryotes
02024 Quorum sensing
JM642_09580 (fadD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
shel01004
]
JM642_09580 (fadD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shel04147
]
JM642_09580 (fadD)
Enzymes [BR:
shel01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
JM642_09580 (fadD)
Lipid biosynthesis proteins [BR:
shel01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
JM642_09580 (fadD)
Exosome [BR:
shel04147
]
Exosomal proteins
Exosomal proteins of breast milk
JM642_09580 (fadD)
Exosomal proteins of breast cancer cells
JM642_09580 (fadD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
Motif
Other DBs
NCBI-ProteinID:
QRK81299
LinkDB
All DBs
Position
2146128..2147801
Genome browser
AA seq
557 aa
AA seq
DB search
MDQPWIKHLPKDVPAEINVDQYSSLIDMFETAVAKYADQPAFINMGATLTYRKLEESSRA
FAAYLQNELKLQKGDRVALMMPNLLQYPIALFGVLRAGMVVVNVNPLYTPRELKHQLIDS
GAKAIVVVSNFARTLEEVVDQTPVKSVIITSLGDQLSAPKRTLVNFVVKYIKKLVPKYDL
PHALSMRETLSRGRRMQYVKPIITGGDLAFLQYTGGTTGVSKGAMLTHSNVVANVLQANG
AYSPALRDGTEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELKKYPF
TALTGVNTLFNALVNSSDFAELDFSRLKLSIGGGMAVQKAVADKWQSITKTRLLEGYGLT
EASPLLTCCPYNLDGYNGSIGFPAPSTLIQVRDDAGNVLPQGETGELFGKGPQIMKGYWQ
RPEETAKVIDKDGWLATGDIGYMDEQGFFYIVDRKKDMILVSGFNVFPNEVEEVVALHPK
VIEVAAVGVPNDASGELVKVFVVAKDKSLTAEDIIKHCRVHLTGYKVPKLVEFRDELPKT
NVGKILRRELRDEVKRA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggatcagccttggattaaacatttaccaaaagatgtgcctgctgagattaatgtggat
cagtattcatcgcttatcgatatgttcgagaccgcggtggctaagtatgcggatcaacct
gcatttatcaacatgggggccacgctaacttaccgtaaacttgaagaaagtagccgtgct
tttgctgcttatttacaaaatgaattgaagctacaaaagggcgatcgtgtcgcactgatg
atgcccaatctgttgcaatatcctattgcgttatttggggtattacgtgctggtatggtg
gtggttaacgttaacccactttataccccgcgagagctcaaacatcagttaattgactcg
ggcgccaaagccattgttgtggtgtctaacttcgcccgcaccttagaagaagtggtcgat
caaacgcccgtgaaaagtgtcattatcactagtttaggtgatcaactaagtgcgccaaaa
cgcaccttagttaactttgttgttaaatatattaaaaaactggtacctaaatacgatcta
ccccatgccctttcgatgcgcgaaaccttgtcaagaggtcgcagaatgcagtatgtcaaa
cccataattactgggggtgaccttgcctttttgcaatatactggtggtacgactggggtt
tcaaagggcgccatgttaacccacagtaatgtggtggcaaacgtgttgcaggccaacggt
gcttattctccagcgctgcgagatggtactgaatttgttgtaactgcattaccgctttac
catatttttgcattaacagtgaattgcttactgtttttacataagggcagtcagaacctc
ttaatcactaaccctcgggatattcctgggtttgtggctgaactcaagaaatatcctttt
accgccctgacaggtgttaacaccctgtttaatgccttagtgaatagtagtgattttgct
gagctggatttttctcgcctcaaattatccattggtggcggtatggccgtgcaaaaagcc
gtggccgataaatggcagagcatcactaaaacccgtttacttgaaggttatgggttaact
gaagcctcgcccctgttaacgtgctgtccctataacttagacggttataacggttctatc
ggtttccctgcgccatctacactcattcaagtgcgtgatgatgcgggtaatgtgttgccc
caaggcgagacgggtgagctatttggtaaaggcccacagatcatgaaaggctattggcag
cgtccagaagagacagccaaagtgattgataaagacggctggctcgccacgggcgatatc
ggttatatggatgaacagggtttcttctatattgttgatcgtaagaaagacatgatttta
gtttctggctttaacgtcttccccaatgaagtggaagaggttgttgctttacatcctaag
gtgatagaagtcgcggcagtaggggttcctaatgatgcaagtggcgagttagtgaaggtg
tttgtggtggcgaaagataaatctttaaccgctgaagacatcattaagcattgccgagtg
catttaacgggatataaagtgccgaagctggtagaatttagggacgagttacctaaaacc
aatgtgggtaagatcttgcgacgagaactgagagacgaagtcaagcgcgcgtaa
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