Shewanella sp. LZH-2: JM642_12020
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Entry
JM642_12020 CDS
T10525
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel00020
Citrate cycle (TCA cycle)
shel00190
Oxidative phosphorylation
shel00650
Butanoate metabolism
shel00720
Other carbon fixation pathways
shel01100
Metabolic pathways
shel01110
Biosynthesis of secondary metabolites
shel01120
Microbial metabolism in diverse environments
shel01200
Carbon metabolism
Module
shel_M00009
Citrate cycle (TCA cycle, Krebs cycle)
shel_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
shel_M00149
Succinate dehydrogenase, prokaryotes
shel_M00982
Methylcitrate cycle
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
JM642_12020 (sdhA)
00650 Butanoate metabolism
JM642_12020 (sdhA)
09102 Energy metabolism
00190 Oxidative phosphorylation
JM642_12020 (sdhA)
00720 Other carbon fixation pathways
JM642_12020 (sdhA)
Enzymes [BR:
shel01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
JM642_12020 (sdhA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
HI0933_like
DAO
GIDA
Pyr_redox_2
FAD_binding_3
Thi4
FAD_oxidored
Motif
Other DBs
NCBI-ProteinID:
QRK78044
LinkDB
All DBs
Position
complement(2710187..2711953)
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AA seq
588 aa
AA seq
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MSIPVREFDAVVIGAGGAGMRAALQISKEGKSCALLSKVFPTRSHTVSAQGGITVALGNA
HEDHWEQHMYDTVKGSDFIGDQDAIEFMCQTGPEAIIELEHMGLPFSRFENGKIYQRPFG
GQSKNFGGEQAARTAAAADRTGHALLHCLYQQNVKHKTQVFSEWYALDLVKNQDGAIVGC
TAIEIETGEIVYFKAKATVLATGGAGRIYASTTNAHINTGDGVGMAMRAGVQMQDMEMWQ
FHPTGIAGAGVLVTEGCRGEGGYLLNKDGERFMERYAPNAKDLASRDVVARSMMTEIREG
RGLDGPLGPHCLLKLDHLGKETLEARLPGVCELSRTFAHIDPADGPIPVLPTCHYMMGGL
PTKVSGQVIRKNADGTEQDVVGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGQHLG
KALDETADPKDATDADIQASLARLQRWENNKDGEDPVQIRKDLQLCMQLNFSVFRRGDAM
AEGLEQLKAIRKRLENAKLSDNSREFNTQRIECLELDNLMATAIATAYAANFRTESRGAH
SREDYLERDDENWLCHSLFDPVTETMDRRAVNMAPKLREAFPPKKRTY
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgagtattccagtacgcgaatttgatgctgtagtgatcggcgccggtggtgcaggtatg
cgtgcagcactacagatttctaaagaaggtaagagctgtgcgcttttatctaaagtattc
ccaacccgttctcatactgtgtctgcgcagggtggtatcaccgttgcgctgggtaacgcc
catgaagaccattgggaacaacacatgtacgataccgtaaaaggttccgactttatcggt
gaccaagacgctatcgaatttatgtgtcaaaccggcccagaagccattattgaacttgag
cacatggggttaccattctctcgtttcgaaaatggtaagatttaccaacgtccttttggt
ggtcaatctaaaaacttcggtggtgaacaagcggctcgtaccgcagcagcggcagaccgt
accggtcacgcactgcttcactgcttataccagcagaacgtaaaacacaaaacccaagtg
ttctctgaatggtatgccctcgatttagtgaagaaccaagacggtgccatcgtaggttgt
actgcgattgaaatcgaaactggtgaaatcgtttacttcaaagccaaagccactgtatta
gctacaggcggtgctggtcgtatctacgcttctaccactaacgctcacattaacactggt
gacggtgtcggtatggcaatgcgtgctggcgttcagatgcaagatatggaaatgtggcaa
ttccacccaaccggtatcgctggtgcgggtgtacttgtgacagaaggttgtcgtggtgaa
ggtggttacctgctaaacaaagacggtgagcgttttatggagcgttatgcaccaaacgcg
aaggatttggcatctcgtgacgtagttgcacgttctatgatgaccgaaatccgtgaaggc
cgtggtttagatggtccattaggcccacactgcttactgaaactcgatcacttaggtaaa
gagactttagaagcacgtctacctggcgtgtgtgaattatctcgtaccttcgctcacatc
gatccggctgatggtccgatccctgttctgccaacttgtcattatatgatgggtgggctg
ccaactaaggtgagcggtcaggttattcgtaagaatgctgacggcactgagcaagacgta
gtgggtctgtttgctgtgggtgagattgcctgtgtgtctgtacatggcgcgaaccgctta
ggcggtaactcattgctagatttagtggtctttggccgtgcagctggtcaacacttaggt
aaagcgctcgatgagactgccgatcctaaggatgcgactgatgctgatattcaagcttct
ctggcacgtttacaacgctgggaaaacaataaagatggcgaagatcctgtgcaaatccgt
aaggatttacaactttgcatgcaattaaacttctctgtattccgtcgtggcgatgccatg
gctgaaggtttagagcagttaaaagccatccgtaagcgtttagaaaatgctaaattgtct
gataactctcgtgagtttaatacccaacgtatcgagtgtttagaattagacaacttgatg
gcgacggcgattgctaccgcttatgctgctaacttccgtacagagagccgtggtgctcac
tcacgtgaagactatttagagcgtgacgatgaaaactggctatgccacagtttgtttgac
cctgtgactgaaaccatggaccgtcgtgctgtgaatatggcgcctaagttgcgtgaagct
ttcccgccgaagaaacgtacctactag
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