Shewanella sp. LZH-2: JM642_16145
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Entry
JM642_16145 CDS
T10525
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel00630
Glyoxylate and dicarboxylate metabolism
shel00680
Methane metabolism
shel01100
Metabolic pathways
shel01120
Microbial metabolism in diverse environments
shel01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
JM642_16145 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
JM642_16145 (fdhF)
Enzymes [BR:
shel01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
JM642_16145 (fdhF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Pyr_redox_2
Molydop_binding
Fer4_20
Molybdop_Fe4S4
Pyr_redox
Pyr_redox_3
Fer2_4
NAD_binding_8
Fer4_7
Fer4
DAO
HI0933_like
Fer4_6
Fer4_9
Thi4
Fer4_8
NAD_binding_7
Amino_oxidase
FAD_oxidored
GIDA
Fer4_18
Fer4_2
FAD_binding_2
FAD_binding_3
Fer4_Nqo3
Fer4_22
Fer4_10
AlaDh_PNT_C
Fer4_16
Fer4_21
Lys_Orn_oxgnase
NADH-G_4Fe-4S_3
Shikimate_DH
Fer4_17
Fer4_15
Motif
Other DBs
NCBI-ProteinID:
QRK78797
LinkDB
All DBs
Position
3664804..3669087
Genome browser
AA seq
1427 aa
AA seq
DB search
MIELRIDNQIVSAEPSDNLLHAARKAGIAIPSLCDPTDASRQLDTQAHAEKQDCNLCLVQ
IENSDASLRCVKACETPAQTGMKVITQSAFLTKQRQAALNTILSDHFADCEAPCQQACPA
GVDVQSYLNHIAQGDHTQAIKVIKDTLPLPLSIGRVCPAFCETECRRGLVDDPIAIRQLK
RHAADLDLADDEHGNSYQPPRLADTGKKIAIIGAGPAGLSAGYYLSNQGHNVEIFEAMPK
AGGWLRYGIPEYRLPKAILDKEIELLCRNGLIIHTQTRLGHEVHLAQLVTDFDAVCLAIG
AQKAVPMNYKGSELAGCYLGVDFLKDHCLDKQLKLGKKVAVIGGGNTAIDCARTAVREGC
DVTLIYRRTRAEMPAEAYEVHEAEVEGVKFHFLTNPIENHSDANGHVQSVTFSKMALGEA
DASGRRAPVDTGETFTEAFDTVIAAVSQAPDLSFMQDSMGQLSHGELALSRWNTLIGCEQ
TMSSGVEKLFVMGDARRGPATAVAAIGDGRKAAKAIDKMLQIGLSCDLHAHDFNSVKTIP
SALKQAKTTSEAAPTLYPHTPRQPRLKMPELTALQRLLNYSEVELGFPADAAMQEAARCL
ECACQANTDCKLRDYATDYGVESKSLATENARHFSVDKSSPFIQFDANRCISCGKCVDVC
QQQSGHCAIQFTEDSYQALPQEISQSLVRRAPRVGFSASMADSRCVQCGNCVQVCPTGAL
VDARDKRQGDKTALKTASTICTYCGVGCRLDLKIDPNTSRIRHIEGNKDSVVNQGMLCVK
GRFGFDFIHSDKRLTTPLIRKNGELQPCSWPEAIAYVAKRLTEIKQQDGSNAIASLASAK
ATNEDNFVLQKFVRSVLGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDIPSIKDSDVIF
IIGSDTTCAHPIIASKIQQAIMQHGARLIVADPKRVGIAEKAEFYVAHRPGTDVMLLNAI
MAEIIRHDWQDKAYIAERTEGIEGLYAELAKEDYSLENAALITGVKAEDIARIARTIGTA
QKTAVYYAMGITQHTTGHDNVTAISNLQLLCGNIGVSGAGINPLRGQSNVQGACDMGALP
NYFTGYQKVTDIHARMRFENHWQTPLSGEIGVTATHMMHDIAKGKIKALYVMGENPVLSD
PDQAHVLNALSQIEFLVVQDIFLTETAELAHVVLPAAAFVEKRGHFTNTERRVQRLEQAL
ASPGEALPDWQIVQALANAMGANWDYKDEEAIWSEINVLTPQYRGIRWERLTTSAEGKVP
QGIQWPCPDENHPGTPIMHQSQFTRGLGLFTPVSYRLPAEMPCNEYPLTLSTGRLLEQFH
TGTLTRKTPGLDLLGAPKVMISVYDAEQLGINNGDKISLITRRGEIEIDAFVTKRAQAGV
LFLPFHFVEAAANKLTINALDPVAYIPEYKVCAVRVEKVTKRVIEPA
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacttcgaatcgataatcagatagtctcggccgagccgagcgataacctatta
cacgcagcccgtaaggcgggtattgctattcccagcctgtgcgatcccactgacgcctca
cggcaattggacacgcaagcccatgccgaaaagcaggactgtaacctttgtctagtacaa
atcgaaaatagcgatgccagtctgcgctgcgttaaagcctgtgaaacccctgcccaaaca
ggcatgaaggtcatcacccaatcggcgtttttaaccaaacagcgccaagcggcactgaac
accatcttgagtgatcactttgccgattgtgaagcgccctgccaacaggcctgccctgcg
ggggtcgatgtacaaagttatctcaaccacattgcccaaggtgaccacacccaagcgatt
aaagtcattaaagacactctgccactgccgctgtcgattggccgtgtctgccccgcgttt
tgcgaaaccgaatgccgccgcggcctcgtcgacgaccctattgccatccgccaactcaag
cgccacgctgccgatttagatttagccgatgacgagcacggcaatagctatcaaccgcca
cgcctcgctgacacgggtaagaaaattgccattataggcgcaggtcctgcgggcttaagt
gcgggttattatctttcgaatcaagggcataatgtcgagatatttgaagccatgcccaag
gcgggcggttggctgcgctacggtattcccgaataccgtttacccaaggcgattctcgat
aaagaaatcgagctgctgtgtcgtaatgggttaatcattcatacccagactcgcctcggc
catgaggttcacttagcccagttggtcaccgacttcgatgcggtgtgccttgcgatcggc
gcccaaaaagcagtgccgatgaattataaaggctcggagctggcgggctgctatctaggg
gtagattttcttaaggatcattgcctcgataagcaattgaagttgggtaaaaaagtcgca
gtcatcggcggcggcaataccgccatcgattgtgctcgtacagcggtacgtgaaggctgc
gatgttactttaatctaccgccgtacccgcgccgaaatgcccgccgaagcttacgaagta
cacgaggccgaagtcgaaggagtaaaattccacttcttaaccaatcccattgaaaatcat
agtgatgccaatggacatgtacagtcggtcaccttcagcaaaatggcgctcggcgaagcc
gatgcttcaggcagacgcgcccccgtggacacaggggaaacctttaccgaagccttcgat
accgttatcgccgcagtatcccaagcaccagacctgagctttatgcaagattccatgggg
caactcagccatggcgagctggcactcagtcgctggaacaccctcattggttgtgagcaa
accatgtcatcgggtgtggaaaaactgtttgtgatgggcgatgcccgccgcggcccagcc
accgcggttgccgccattggtgatggccgaaaagcggcaaaagccattgataaaatgctt
caaattggccttagctgtgatttacatgcccacgattttaactcggtaaaaaccattcca
agcgcccttaagcaagcaaaaacaacatcagaagccgcaccaacgctttatccccatacg
ccacgtcagccccgcttgaaaatgcccgaattaacagcactacaacggctgctgaattac
agtgaagtcgaattgggctttcccgcagatgccgctatgcaagaggcggcgcgttgcctt
gagtgcgcctgccaggccaataccgactgtaaactgagggattacgctacggattacggt
gttgagagcaaaagcttagccactgaaaatgcacggcatttcagcgtagataagagttca
ccctttattcaatttgatgctaaccgttgtattagctgcggcaaatgcgttgatgtgtgc
cagcagcagagcggccactgcgccatccaatttaccgaagattcctatcaggcgctgcca
caggaaatcagtcaaagcctcgtgcgccgcgcgccgagagttggctttagcgcgagcatg
gccgatagtcgctgtgtacaatgtggcaactgcgtgcaggtgtgtcccactggcgcactg
gtcgatgcgcgggacaaacgccaaggcgataaaacagcacttaaaaccgcctcgacgatt
tgtacttactgcggtgtaggctgtcgtctggatcttaaaattgaccctaacaccagtcgc
attcgccatatcgaaggcaataaagactcggttgttaaccaaggcatgttatgtgttaaa
gggcgttttggtttcgattttattcacagcgacaaacgcctcacgacaccattaatccgt
aaaaatggcgaactacaaccttgtagttggcccgaagccatcgcctatgtggcgaaacgc
ttaaccgagataaaacagcaagatggcagcaacgcgatcgctagtctcgcctctgccaaa
gcgactaacgaagataactttgtgctgcaaaagtttgtccgcagcgttcttggtaccaat
aatatcgatcactgcgcccgcctatgccactcatcgacggtaacgggcttacagcagagt
attggtagtggcgcgatgaccaatgatattccaagtattaaggactcggatgttatcttt
atcatcggttcagacaccacctgcgcccatccgattattgcctcaaaaatccagcaggcg
ataatgcagcacggcgcacgattaatcgtggccgatcctaaacgcgtaggcatagcagaa
aaggccgaattctatgttgcccacagaccgggcacggatgtgatgctattaaacgccatt
atggcggaaattattcgccacgattggcaagataaagcctatatcgccgagcgtactgaa
gggatcgagggcctctatgcggaattagcgaaggaggattactccctcgaaaacgccgcc
ctaatcacaggtgttaaagctgaggatatcgcccgcatcgcgcgtaccataggcactgca
caaaaaacggcagtttactacgccatgggcatcactcagcatacgacaggccacgataac
gtcaccgccatttctaacctgcaactactctgcggcaatatcggagtatcaggggcgggt
atcaatccgctacgcggccagagtaatgtgcaaggggcttgtgatatgggtgcattaccc
aactacttcacaggctatcaaaaggtcacggatattcatgccagaatgcgcttcgaaaac
cactggcaaacgccgttatcgggggaaattggcgtcacggcaacccacatgatgcacgac
attgccaagggcaaaatcaaagccttatatgtgatgggtgaaaatccagtgctgagcgat
cccgatcaagctcatgtgcttaatgcactgagtcaaatcgagtttctggtagtgcaggat
atctttttaaccgagacggccgagcttgcccatgtggtcttgcccgccgccgcttttgta
gaaaaacgcggtcactttaccaataccgagcgtcgggtgcagcgactcgagcaagcactt
gcctcaccgggggaagccttacccgattggcagatcgtacaagcgctggctaatgccatg
ggcgcaaactgggattacaaagatgaagaggctatttggtctgaaatcaatgtattaaca
ccccagtatcgcggtattcgttgggaaagattaaccacaagtgcagagggtaaagtgcct
cagggtattcaatggccctgtccggatgaaaatcatccgggaacaccgattatgcaccag
agtcaattcacccgcggtttaggcttatttacgcccgtcagttatcgtcttcccgccgaa
atgccctgcaacgagtacccactgacgctatcaacggggcggctcttagaacaattccac
acaggtacactcacccgtaaaacaccgggactggatttactcggcgcacctaaagtgatg
atttcagtctatgatgccgagcaactcgggataaataatggcgacaaaattagccttatc
acccgccgcggcgagattgagatagatgcctttgtgactaaacgcgcccaagccggtgta
ctgttcttgccgttccattttgtcgaagccgcagcgaacaaactcaccatcaatgcctta
gatcccgtggcttatatccctgaatataaggtttgcgcagtaagagttgaaaaggtgact
aagcgggttatcgaaccagcctaa
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