Shewanella sp. LZH-2: JM642_16295
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Entry
JM642_16295 CDS
T10525
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
shel Shewanella sp. LZH-2
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shel03009
]
JM642_16295 (srmB)
Enzymes [BR:
shel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JM642_16295 (srmB)
Ribosome biogenesis [BR:
shel03009
]
Prokaryotic type
rRNA helicases
JM642_16295 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AASDHPPT_N
AAA_11
AAA_30
PhoH
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QRK78824
LinkDB
All DBs
Position
3702014..3703276
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AA seq
420 aa
AA seq
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MQFEDFQLDPSLLESLKAMGHNTPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL
QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL
KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ
NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLL
KQEEVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL
ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI
ERYIEQPLKRRIIEELRPKHKEARVPSKKKAKVKAKEAAKKTSKKEAAKKASKIARKKQS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagatttccagcttgaccctagcttattagagtcacttaaagccatgggg
cacaatacgcccaccacaatccaacaagaaacgttgccgcatgctttagagcaacgggat
attttggcgcgcgccccgacgggtacaggtaaaaccgccagtttcttattacccgcgcta
caacatttaatcgacttcccgcgtcgttactcgggtcaagcgcgtgtattaattcttacc
ccaacccgtgaattggcgagccaaattcaccgctatgcctgccatttagccacagaccaa
gggctaaatattgccattatcacgggtggagtgccctatgcacctcaagaagaagcgcta
aagggcaatatcgatattctggtcgcgacaccgggtcgcctgatggaatatttagataaa
ggtaaattcagtgcagaatccgtcgacatactgatcatcgatgaagctgaccgtatgctc
gatatgggattctctgccgtggttaaagccatcgcactcgaagcccaaggccgcaagcag
aatatgctgttttcagccacccttgaaggcagtggtgttatccgctttgcccgcgaagtg
cttaatgatcctatcgaaatcgatgttgatgcaccgcgcaaagagaaagccaagatccac
caatggatccatctcgccgatgataaagaccataaatttgccctgctttgccacctgtta
aaacaggaagaagtaaaacgcgccatcgtattcgtgaagactcgcgatgtggtctctagc
ctcgaaggtcagttacttcaagccggcatcccttgtgcttttatgcgcggagatatggaa
cagaagaaacgtttccaagctttaagtcgttttactaagggcgaagtgaatgtattgctg
gcgaccgatgtggctgcccgcggtatcgatattgatgatatcacccacgtgattaacttc
gatatgccacgttcagccgatacctacatccaccgtattggtcgtactggccgcgcgggt
gccaaaggtacggcaatttctctggctgaggcccatgatatgcgcatcgttggtaagatt
gagcgctatattgagcaaccccttaaacgccgaatcattgaggaattacgtcctaagcac
aaagaggcgcgagttccatccaagaaaaaggcaaaagtaaaagccaaagaagcggcgaaa
aaaaccagcaaaaaagaagcggcaaaaaaagcgagcaaaattgcccgcaaaaaacagtcc
tag
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