Shewanella sp. LZH-2: JM642_16580
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Entry
JM642_16580 CDS
T10525
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
shel Shewanella sp. LZH-2
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shel03009
]
JM642_16580 (dbpA)
Enzymes [BR:
shel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JM642_16580 (dbpA)
Ribosome biogenesis [BR:
shel03009
]
Prokaryotic type
rRNA helicases
JM642_16580 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
AAA_19
Helicase_C_2
U-box
AAA_22
CMS1
HNH_3
YlmH_RBD
Motif
Other DBs
NCBI-ProteinID:
QRK78874
LinkDB
All DBs
Position
complement(3764685..3766094)
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AA seq
469 aa
AA seq
DB search
MSNSDTKPTPSLAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGS
GKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVP
MGPQIGSLEHGAHIIVGTPGRIVDHLDRNRLDLSHLNMLVLDEADRMLEMGFQPQLDAII
EQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQ
ALQLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANK
SACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDG
YKIALLEEYLDREITSESLPSLSLLGSAPNAPTMITLQIDGGKKEKLRPGDILGALTGDN
GIEGTQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaattcagatactaagccaactccatcactggctttctcgacccttaagctaaaa
accgaactgcttgagaacctttcttctatgggctacaacgagatgacgcccattcaggcg
caaagcttgccagctattttagcgggtgaggatgtgataggtcagggtaaaacggggtca
ggtaaaacggcggcctttggtctaggtttactaaataaattagacgttaagcgttttcgc
attcaaaccttagtgctatgcccaacccgcgagttggccgaccaagtggcgcaggagatc
cgtactctggcccgcggtatacacaacgtgaaagtattaaccctgtgtggtggtgtgcca
atggggccacaaattggctctttagagcatggtgcccatattattgtgggaaccccaggt
cggattgtcgatcacttagaccgcaatcgtttagatttaagtcatctgaatatgttagtg
cttgatgaagctgaccgcatgctcgaaatggggttccaacctcagctcgatgccattatt
gaacagtcaccacgcgagcgccaaacgctgctgtttagtgcgacattccctgagcaaatt
caatcgattgctaaacaaatcatgtataaccctgtgatggttaaggccgcggttacccat
gaaaaaaataccatcgaacagcatttttatcagttagatgacgataagtcgcgcatgcaa
gcgctgcaattattactgttagaacataagccagaaagcgcagtggtgttttgtaatacc
aagcgtgaaacgcaaaaagtggccgacgaactcgagggtttaggctttagtgttttggcc
ttgcacggcgatttagaacagcgcgatagggacgaaaccctgttgcaatttgctaacaag
agcgcatgcgtgctggtggctaccgacgtggccgcccgtggtttagatatcgatgcgcta
gatgccgtatttaactaccatgtggcctacgataccgaagtgcacattcaccgtatcggc
cgtactggccgtgcgggcagtaaaggcgctgcttataccttttataacgatcaagacggc
tacaagattgccttgctagaagagtacttagatcgagaaattaccagtgaatcactgcca
tcattaagcttgcttggcagtgcgcctaatgcaccaaccatgatcactctgcaaatcgat
ggcggtaaaaaagagaagcttcgccctggtgatattcttggcgccctgacgggtgataat
ggcattgagggtacgcaggtgggcaagatcctcgtgaccgactaccgcgcttatgtggcg
gtaaaccgtaaagtggctaaaaaggcactgagcaagatcaccagcggccgcattaagggt
aagtcttaccgcgcatggctgatgaaataa
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