Shewanella sp. LZH-2: JM642_17425
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Entry
JM642_17425 CDS
T10525
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JM642_17425 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shel03019
]
JM642_17425 (groL)
03110 Chaperones and folding catalysts [BR:
shel03110
]
JM642_17425 (groL)
03029 Mitochondrial biogenesis [BR:
shel03029
]
JM642_17425 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shel04147
]
JM642_17425 (groL)
Enzymes [BR:
shel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
JM642_17425 (groL)
Messenger RNA biogenesis [BR:
shel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
JM642_17425 (groL)
Chaperones and folding catalysts [BR:
shel03110
]
Heat shock proteins
HSP60 / Chaperonin
JM642_17425 (groL)
Mitochondrial biogenesis [BR:
shel03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
JM642_17425 (groL)
Exosome [BR:
shel04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
JM642_17425 (groL)
Exosomal proteins of other body fluids (saliva and urine)
JM642_17425 (groL)
Exosomal proteins of breast cancer cells
JM642_17425 (groL)
Exosomal proteins of colorectal cancer cells
JM642_17425 (groL)
Exosomal proteins of bladder cancer cells
JM642_17425 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
QRK79029
LinkDB
All DBs
Position
complement(3958913..3960550)
Genome browser
AA seq
545 aa
AA seq
DB search
MAAKEVVFGNDARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGI
DKAVIAAVAELKNLSQDCADSKAIAQVGTISANSDESIGQIIATAMEKVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGL
AKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTV
IAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDY
DKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALV
RVASKIADVEVANEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANNVKNGSGNYGYNA
GNDTYGDMLEMGILDPTKVTRSALQFAASIAGLMITTEAMVAELPKSDAPDMGGMGGMGG
MGGMM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagttgtatttggtaacgacgcacgcgtaaaaatgctggctggtgta
aacattctggctaacgcagttaaagtgaccttaggccctaaaggccgtaacgtggtatta
gacaagagctttggctcaccactgatcactaaagacggtgtgtctgttgcaaaagaaatc
gaattagaagacaaattcgaaaacatgggcgcgcaaatggtgaaagaagttgcttctaaa
gccaacgacgccgccggtgacggtaccactactgcaactgttctggcacaagccattgtc
actgaaggcttaaaagccgttgcagcgggtatgaacccaatggacttaaagcgcggtatc
gataaagccgtgattgccgccgttgctgaactgaaaaacctttctcaagattgcgctgac
tcaaaagcgatcgctcaagttggtactatctctgcaaactctgacgagtcaatcggccaa
atcattgccacagcaatggaaaaagtcggtaaagaaggcgtgatcacagtcgaagaaggc
caagcgttagaaaacgaactggacgtagtagaaggtatgcagttcgaccgtggttacctg
tctccatacttcatcaacaagccagaaaccggcagcgttgaattagatcacccattcgta
ctgttagttgacaagaaaatctctaacattcgcgaactgttacctatccttgaaggtctg
gcaaaaactggtaagccattactgatcgttgccgaagatgttgaaggcgaagccttagct
acgctagttgttaacaacatgcgcggtatcgtgaaagtggcagcggttaaagccccaggc
tttggtgaccgtcgtaaagccatgctgcaagacgtagcgattttaactggcggtactgtt
atcgctgaagaaatcggcctagagcttgaaaaagcaaccctagaagatttaggtactgct
aagcgtgttgtgatcactaaagacaacaccaccatcatcgatggtaacggtgaacaagcg
caaatcgaagcgcgcgttagccaaatcaagcaacaaatcgaagaatcaacttcagactac
gacaaagaaaaactgcaagagcgtatggctaaattagctggcggtgttgcggtaattaaa
gtcggtgcagcgactgaagttgaaatgaaagagaaaaaagctcgcgtagaagacgcactg
cacgcaacccgtgctgcggttgaagaaggtgtggttccaggcggcggtgttgctctggta
cgtgtagcttctaagattgctgacgttgaagtcgctaacgaagaccaaaaacacggtgtg
gttattgccctacgtgcaatggaagcgccactacgtcaaatcgcgaccaacgcaggtgaa
gaagcctctgttgtggctaacaacgtgaaaaacggcagcggtaactacggttacaacgcg
ggcaacgacacctacggtgacatgttagaaatgggtatccttgacccaactaaagtaacc
cgtagcgcactgcaattcgcagcgtctatcgcaggcctgatgatcaccaccgaagcaatg
gtagctgagctgccaaagtctgatgcgccagatatgggcggtatgggtgggatgggcgga
atgggcggcatgatgtaa
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