KEGG   Shewanella sp. LZH-2: JM642_17915
Entry
JM642_17915       CDS       T10525                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
shel  Shewanella sp. LZH-2
Brite
KEGG Orthology (KO) [BR:shel00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shel03032]
    JM642_17915
   03036 Chromosome and associated proteins [BR:shel03036]
    JM642_17915
   03400 DNA repair and recombination proteins [BR:shel03400]
    JM642_17915
DNA replication proteins [BR:shel03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    JM642_17915
Chromosome and associated proteins [BR:shel03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    JM642_17915
DNA repair and recombination proteins [BR:shel03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      JM642_17915
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-DNA_bdg
Other DBs
NCBI-ProteinID: QRK79119
LinkDB
Position
4076735..4077007
AA seq 90 aa
MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETATRAARTG
RNPQTGKEIQIAEATVPKFKAGKTLRDSVN
NT seq 273 nt   +upstreamnt  +downstreamnt
atgaacaaaactgaacttatcgccaaaattgcagaaaatgccgatatcactaaagctgaa
gcagcacgagcattgaaatctttcgaagcggcgattactgaatcaatgaaaaacggtgac
aaaatctctatcgtcggatttggctcctttgaaacagcgactcgtgcagctcgtactggt
cgtaacccacaaacgggcaaagaaatccaaattgcggaagcgactgtacctaagtttaaa
gcgggtaaaaccctgcgtgatagtgtgaactaa

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