Shewanella sp. LZH-2: JM642_19115
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Entry
JM642_19115 CDS
T10525
Name
(GenBank) ligand-gated channel protein
KO
K16089
outer membrane receptor for ferrienterochelin and colicins
Organism
shel Shewanella sp. LZH-2
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shel02000
]
JM642_19115
Transporters [BR:
shel02000
]
Other transporters
Pores ion channels [TC:
1
]
JM642_19115
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GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
OMP_b-brl_3
MtrB_PioB
Porin_2
DUF2490
Motif
Other DBs
NCBI-ProteinID:
QRK79345
LinkDB
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Position
complement(4359908..4361899)
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AA seq
663 aa
AA seq
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MLLRRKKILAQLVSTALLLPATQALADTAPDQDKMMERIVVTASGFEQQVRDAPASISVI
TREDLDTRFYRDLTDAMLEVPGVVVTGGADRRDISLRGMGSQYTLILVDGKRQSSRETRT
NSDGPGVEGAWTPPLAAIDRIEIVRGPMSSLYGSDAIGGVINIITRKVPNEWQGELRLDS
TLQEKSASGNVYQGNFFVNGGLIKDLLGVQLYGQYTQREEDNIYGGYRGRDADNLTARFA
LTPNQDHDIMLEVGIANQELDSTLGKTVAPLAPGASCGRSGCPASSTTEYENSTISLSHT
GRWDFGTSDTYIKHEVYDNKSRKMKIKNTDAQTSVIATLGESHTATFGAAFNYQDLTDET
GNQVSDLTDISRRQWSVFSEDEWRIVDNFALTLGLRLDDDENFGDHLSPRIYGVWGLTEH
TTLKGGVSTGFRAPSLRQTVPDWGQVSRGGNMYGNPDLQPETSVNYELGIYTDLTDSITA
SAGVFYNEFEDKITRVACPATQCTDGPNQFGSDPTTYVNIDEAVTQGVELSIDYKILSNL
ALTGNYTYTDSEQKTGAYKGSPLNQLPKHLVQLSVNYEPIDNLNTWLRVNYRGEESQPTT
GPSSRSLIAPSYTLLDLGANYRINDSIKFSAGIYNAFDKEITQEEYGYIEDGRRYWLGMT
YGF
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgttgttacgtcgtaaaaagattctcgcacagctagtatcaaccgcattattgctacca
gccactcaggctttggcggataccgcacccgatcaagacaagatgatggaaagaattgtc
gttactgcatcgggctttgagcagcaagtacgtgacgcgcccgcttctatcagcgtcatc
acccgagaggatcttgatacacgtttttaccgtgacttaaccgacgccatgttagaagtc
cccggcgtggtggtgactggcggtgccgaccgtcgggacattagtctacggggcatgggc
agccagtacacgttgatcctcgtcgatggtaaacgccagtcttcccgcgagacccgcacc
aacagcgatggtccgggtgttgaaggcgcttggacgccgccgctcgccgcaattgatagg
attgaaattgtccgtggccccatgtcatcgctttatggctctgacgctattggtggggtg
atcaacattatcacccgtaaagtgcccaatgagtggcagggggaattgcgcctcgatagc
accttgcaggagaagtcagcctcgggcaatgtgtatcagggcaacttttttgtgaacggt
ggcttgattaaagatttgcttggcgtgcagttatacggccaatatacccagcgtgaagaa
gataatatctacggtggttaccgaggccgtgatgcggataatctcaccgccagatttgcc
ctcacgccgaatcaagaccatgacatcatgttggaagtcggtatcgccaaccaagagttg
gatagcaccttagggaaaaccgttgcgccattagcgccgggggccagttgtggccgcagt
ggttgccctgcatcgtcgacaaccgagtatgaaaacagcacgatttcattgtcgcatacc
ggacgttgggactttggcacatcggatacttatatcaagcacgaagtgtacgataacaag
tcccgcaagatgaaaatcaagaataccgatgctcaaaccagtgtgatcgccaccctaggt
gaaagccataccgccacctttggtgctgctttcaattatcaagatctcaccgatgaaact
ggcaatcaggtcagtgacttaaccgatattagtcgccgtcaatggtcggtgttctcagag
gatgaatggcgtattgtcgataattttgccttaaccttgggcctgcgtttagacgatgat
gaaaactttggtgaccaccttagtccacggatttatggtgtttgggggctgaccgagcac
actaccttaaaaggcggtgtgtcgacgggctttcgggcgccgagcctaaggcaaaccgtg
ccagattgggggcaggtgagccgaggcggcaatatgtatggtaatccggatttgcaaccc
gaaacctctgtgaactatgagttaggcatttacacggatttgaccgattccatcacggcc
agtgctggtgtgttctataacgagtttgaggacaagatcacccgtgtcgcttgccctgcg
actcaatgtactgatgggccgaatcagtttggttccgacccaaccacctatgtgaatatc
gatgaggcagtcacccaaggggttgagctgagtatcgactataaaatcctcagcaacttg
gcgctcacgggtaactacacttataccgattcggagcaaaaaacgggcgcttacaaaggg
agtccattgaaccagctacctaaacatctggtgcaattgtcggttaactatgagcctata
gataacttaaatacttggctgcgggttaactaccgtggcgaagagagccagccgaccaca
ggtccttcttcgcgtagtttgattgcgccgtcctatacgctgttagatttaggggccaac
tatcgcattaatgacagcattaagttcagcgcgggtatttataacgccttcgataaggaa
ataacccaagaagaatatggctacattgaagatggccgccgttactggttaggtatgact
tatggtttttaa
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