Shewanella sp. LZH-2: JM642_19330
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Entry
JM642_19330 CDS
T10525
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
shel Shewanella sp. LZH-2
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shel03021
]
JM642_19330 (rpoH)
Transcription machinery [BR:
shel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JM642_19330 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
Fe_dep_repress
2Fe-2S_thioredx
Motif
Other DBs
NCBI-ProteinID:
QRK79386
LinkDB
All DBs
Position
complement(4410964..4411821)
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AA seq
285 aa
AA seq
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MTFQTQSMALTVPQGSSSLEAYIHSVTSMTMLDAETEYELAKRLQETGDLQAAKQLIMSH
LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNIRKAKTRLGWFSDDEVAMVAENLGVSKADVTEMESRMAA
QDPAFDLSSDNDDEQDFAPVQYLEDHSSDLAENIENDNWESNAQGRLLSAIKTLDERSQH
ILRARWLDDDKTTLQELAETYQVSAERIRQLEKNAMNKLKACMEA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacctttcaaacgcaatcaatggcactaacagtccctcagggcagcagtagtttagaa
gcttatatccattcagtgactagcatgacaatgttagacgctgagactgagtatgagtta
gccaagcgtttgcaggaaacgggtgatctgcaagcagcgaagcaactgattatgtcgcac
ttacgttttgtggtgcatgttgctaagggctactcaggttacggtctgccgcaggcggat
ttgatccaagaaggcaacatcggtctgatgaaagcggttaagcgtttcgatcccgatgta
ggcgtccgtctagtgtcttttgctgtgcactggattaaagctgaaattcacgaatatgtg
ctgaaaaactggcgcattgttaaagtcgctaccaccaaagcgcaacgtaagctgttcttt
aatatccgtaaagcgaaaactcgcctcggttggtttagcgatgatgaagtcgcaatggtc
gcagaaaacttaggtgtctctaaggccgatgtgactgagatggaatcacgtatggcggcg
caggatcctgcgtttgatctgagcagtgacaacgatgatgagcaggattttgccccagtg
caatatcttgaagatcattcatcggatttagccgaaaacatcgaaaacgataactgggaa
tccaatgcccaaggtcgtttattatcggccatcaaaaccttagacgagcgtagccagcat
attctgcgtgcccgttggttagacgatgataaaaccacactgcaggaattggcagaaacc
tatcaagtgtcagctgagcgtattcgccagttagagaaaaacgccatgaacaagcttaag
gcttgtatggaagcctaa
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