Shewanella sp. MTB7: HWQ47_01125
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Entry
HWQ47_01125 CDS
T10730
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shem Shewanella sp. MTB7
Pathway
shem03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HWQ47_01125 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shem03400
]
HWQ47_01125 (mutM)
Enzymes [BR:
shem01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HWQ47_01125 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HWQ47_01125 (mutM)
DNA repair and recombination proteins [BR:
shem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HWQ47_01125 (mutM)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF1631
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
WBJ95771
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All DBs
Position
complement(247839..248654)
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRQGISPYLIDQEVTGLTVRNASLRWPVPELAQQIVGQTIRSVHRRAKYLL
IDTDAGTTIVHLGMSGSLRIVTALTPVEKHDHIDLALASGKILRFNDPRRFGAWLWYELP
IDAHPLLTKLGPEPLTEAFTPGYLTEALKNKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPETEAGKVDSERLIILVSEIKQILANAIKQGGTTLKDFTNADGKPGYFAQKLHVYGR
GGQTCTQCGNLLSEIKLGQRATVFCGLCQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacttccagaagttgaggtgacccgacaggggatctcgccatacttaattgac
caagaggttaccggacttaccgtacgtaacgctagtctgcgttggcctgtgcctgaactt
gcccagcagattgtcggtcaaaccatacgtagtgtacaccgccgtgctaaatacctgctt
attgacacagatgctggcacgaccatcgtgcatctcggtatgtctggcagcttaaggatc
gtgacagccttaactccagtggagaaacatgatcatatcgacttagccttagcaagcggt
aagatattacgctttaacgatcctcgccgcttcggagcctggttatggtatgaacttccc
atcgatgctcatcccctacttactaaactgggacctgaaccgctaacagaggcattcacc
ccaggttatttgactgaagcattaaagaataagaagaaggcgataaagctctgcctcatg
gacaaccatatcgtcgtcggagtgggaaacatttacgccaatgaagccctgtttgctgcg
ggaatacacccagagacagaagcgggcaaggtagattcagaacgcctgataatcttagtg
tctgagataaaacagatcttggctaatgcaattaaacaaggtgggacaacgttaaaagat
ttcacaaatgctgacggtaagccaggatattttgctcaaaagctgcatgtctatggccgg
ggcggccaaacctgtacccaatgtggcaatctgctcagtgagataaaactgggacaaaga
gccactgtgttctgtggcttatgtcagacgagataa
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