Shewanella sp. MTB7: HWQ47_03505
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Entry
HWQ47_03505 CDS
T10730
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shem Shewanella sp. MTB7
Pathway
shem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWQ47_03505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shem03019
]
HWQ47_03505
03009 Ribosome biogenesis [BR:
shem03009
]
HWQ47_03505
Enzymes [BR:
shem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HWQ47_03505
Messenger RNA biogenesis [BR:
shem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HWQ47_03505
Ribosome biogenesis [BR:
shem03009
]
Prokaryotic type
rRNA helicases
HWQ47_03505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBJ96211
LinkDB
All DBs
Position
complement(852558..854384)
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AA seq
608 aa
AA seq
DB search
MSSEEKTFRELGLSEPLLRALDELGYEKPTPIQAASIAPLMAGKDILGQAQTGTGKTGAF
ALPLLNRIDPNLNSPQILVLAPTRELAVQVAEAFASYAKFMKGMHVLPIYGGQSMQQQLN
ALRRGPQIIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKE
RQLALFSATMPEQIKRVASKYLTEPVHVKIATTTTTVETIEQRFVQVSQHNKLEALVRVL
EVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATNSRISPMDVPSPETVTERRLSRLGEQVSEIIAKDSLDFMKGAVAQLCQQLEVDTDV
LAAALLQQVQKDRPLQLPSINERQRDSRDDRNASDRGDRNSRDRAPRDRAERPRRDARPT
PTNLGKADALKDNPDVKMCRYIIDVGREHGVGVGNIVGAVANEANIDSRYIGQIQLFDNI
TAIDLPDGMPKDVLEHLRKVRVCGKPLNIREADGAELPAGGDSRPARRPRDRRPTGDRKP
HRKGPASE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgaagaaaaaactttccgcgaactcggtctttccgagcctttgctgcgtgct
cttgacgagcttggctacgaaaagcctacccctattcaagctgcgagtatcgctcctctt
atggccggtaaggacatattaggtcaagcgcaaacaggtaccggtaaaaccggtgctttt
gctctgccacttttgaatagaattgaccctaaccttaattctccacaaattttagtacta
gcgccaacacgtgaacttgctgttcaggttgctgaagcatttgctagctacgctaaattt
atgaagggcatgcacgtactacctatttatggtggtcagagcatgcaacaacagcttaat
gctcttagacgtggtcctcagatcatcgttggtactcctggccgtgttatggaccatatg
cgtcgtggcactcttaagctagattcgcttaaagctatggtacttgacgaagctgatgaa
atgctaaaaatgggcttcatcgatgatatcgaatggatccttgagcacacacctaaagag
cgtcaactagcacttttctcagctactatgcctgagcagattaagcgtgttgctagcaag
tatttgactgagcctgttcacgttaaaattgcaacgacaacaacaactgttgaaaccatt
gaacagcgtttcgttcaagtatcacagcataacaagctcgaagcactagtacgtgttcta
gaagttgagaagactgaaggtatcatcatcttcgttcgtactcgtaacagctgtgttgag
ctagctgaaaagctagaagctcgcggttatgcttcatcaccactacacggtgacatgaac
cagcaggctcgtgagcgtgcagttgatcagcttaagcgtggcaagctagatatcattatc
gccactgacgtagcggcccgtggtctagacgttgagcgcataggacacgtagttaactac
gatatcccatatgatactgaagcttatgtacaccgtattggccgtactggccgtgctggt
cgtactggtatggcgattctgttcgtcactcatagagaaatgcgtatgctacgcactatc
gaacgtgcgactaacagccgtatctcgccaatggatgtaccaagtccagagacagtaact
gagcgtcgtctatctcgtttaggtgaacaagtttctgaaatcattgctaaagactcttta
gatttcatgaagggcgctgttgcacaactttgtcagcaacttgaagtggatactgacgtt
cttgctgctgcattactgcaacaagttcaaaaagatcgccctcttcagttaccatcaatt
aacgaacgtcagcgtgacagtcgtgatgatcgtaatgcaagtgatcgtggtgaccgtaac
tctcgtgatcgtgctccgcgtgatcgcgcagaacgtcctcgtcgtgatgctcgtccgact
ccaactaatcttggtaaagccgatgcactaaaagacaatccagacgttaagatgtgtcgt
tacatcatcgacgtaggccgtgagcatggtgttggagtcggtaacattgttggcgcagtg
gctaacgaagcaaacatcgacagccgttacattggtcaaattcagttattcgataacata
acagctatcgatctgcctgatggaatgccaaaagatgtgcttgagcaccttagaaaagtt
cgtgtttgtggtaagccactaaacatacgtgaagcagatggcgcagaattacctgctggt
ggcgatagccgcccagcacgtcgtccacgcgatcgtcgtccaacgggtgacagaaagcca
caccgtaaaggtcctgctagtgagtaa
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