Shewanella sp. MTB7: HWQ47_03990
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Entry
HWQ47_03990 CDS
T10730
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shem Shewanella sp. MTB7
Pathway
shem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWQ47_03990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shem03019
]
HWQ47_03990
Enzymes [BR:
shem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HWQ47_03990
Messenger RNA biogenesis [BR:
shem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HWQ47_03990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
ERCC3_RAD25_C
HEM4
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WBJ96296
LinkDB
All DBs
Position
complement(980094..981566)
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AA seq
490 aa
AA seq
DB search
MSFTSLGLSAPILKAVALKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGQRAQAKQVRALVLTPTRELAAQVAESVETYGKFLPLNSAVIFGGVGIGPQISKL
GKGVDILVATPGRLLDLYNQRAVNFSQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQ
NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQNQKTAALIHLIKQ
NEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVAT
DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDETKLLRDIER
LIKQNIPRKEIEGFVPTKVLPENDLDSSRHGQNRGPRNANGRGNGRNGNSQPRGNSGARN
DSGSNSDRRPRRNTETKTEHKDGQRSGDTARGHQPNDSNSSHSRSRRPSSQASSSSPASK
PTSNSSIWGK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctggggttatctgccccaatattaaaagctgttgccttaaaaggt
tacgatacaccttcgccaattcaagctcaggctattccggccgtgctcgaaggcaaggat
gtgatggccgcagctcaaactggtacaggtaaaacagcaggctttaccctgcctctttta
gagcttttaagtaaagggcaacgagcacaggctaagcaagttcgagctctggtattaaca
ccgactcgtgagttagcagcccaagttgctgagagcgtagaaacttatggtaagttttta
ccccttaactcggctgtgatcttcggcggtgtaggtatcggtccacaaatatccaagtta
ggtaaaggtgtcgacatattggtcgcaacaccagggcgtttactcgacctgtataaccaa
cgcgccgtcaacttcagccaacttgaagtccttattctcgatgaagccgaccgtatgtta
gatatgggctttattcatgacattaaaaaaattcttaaggtattacccgctaagcgtcag
aacttaatgttctcagcaaccttctctgatgatatccgtaagttagctaaaggcttagtc
aacaacccagttgagatatcggttacaccgcgtaatgccacagcgaaaactgttgagcag
tatatctacccggttgatcagaatcagaagaccgcagcactgatacacttgatcaagcaa
aatgagtggaagcaagtattagtctttagccgtaccaaacatggcgccaaccgtatcgct
aaaaacttagaagcgagtggactcaccgctgcagccattcacggtaacaagagccaagga
gcgcgtactaaagcactcgctaacttcaaaagtggtgaagttcgcgtgttagttgcaact
gatatcgcagctcgcggtattgatattgatcaactgccaaacgtagtcaacttcgatcta
ccgaacgtgcctgaggattatgttcatcgcatcggtcgtaccggtcgtgctggtgctaac
ggtcaggcagtttctctggtcagcggtgatgaaactaaactgcttagagatatcgagcgt
ttaattaagcaaaatattcctcgtaaagagattgagggttttgtgccaactaaagtcttg
cctgaaaatgatctcgatagcagtagacatggtcaaaaccgtggtccacgaaatgctaat
ggcagaggcaatggccgtaatggtaatagtcagcctcgtggcaatagtggtgcacgtaat
gactctggcagcaactctgacagacgtccacgcagaaacactgaaaccaagacagagcat
aaagatggtcaacgtagtggtgataccgctcgaggtcatcagcctaatgacagtaattct
agtcatagccgctcacgcaggccttcaagccaggcctcatcaagctcaccggcgtcaaaa
ccaacatcaaatagcagtatttggggcaagtaa
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