Shewanella sp. MTB7: HWQ47_11105
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Entry
HWQ47_11105 CDS
T10730
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
shem Shewanella sp. MTB7
Pathway
shem03030
DNA replication
shem03430
Mismatch repair
shem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWQ47_11105 (holB)
03430 Mismatch repair
HWQ47_11105 (holB)
03440 Homologous recombination
HWQ47_11105 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shem03032
]
HWQ47_11105 (holB)
03400 DNA repair and recombination proteins [BR:
shem03400
]
HWQ47_11105 (holB)
Enzymes [BR:
shem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HWQ47_11105 (holB)
DNA replication proteins [BR:
shem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HWQ47_11105 (holB)
DNA repair and recombination proteins [BR:
shem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HWQ47_11105 (holB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_delta
FlhD
Piwi
DUF4395
Motif
Other DBs
NCBI-ProteinID:
WBJ97588
LinkDB
All DBs
Position
2618721..2619632
Genome browser
AA seq
303 aa
AA seq
DB search
MLDIPWLKPIVKDFCVQLQSQHVGHAYLIGVHIGYGGESLTLAMAKAALCQALTIEGACG
FCKGCQLIEANNHPDFYHVVADGNQIKVDQIRELCQKLTSTSQQGGRRVVVISQCEKLNL
AAANALLKTLEEPGKETLLLLQSNTPSRLMATINSRCQRVHFQSPSTDEIKTWLGQSLEV
SSDVTWCLPVMGGPLELASALQDQRYEHLLQLRKDWTQSLSSGHLCANLININEKQVSDA
IKVLYLILRQKLVKQTQLDALLRVKVSALAAKIMNTYHKLSVMPNVNSLALFQGFILEYK
TLT
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgttggatattccttggcttaaacctattgttaaagacttttgtgtacagcttcaatcc
caacatgtgggacatgcttatttgattggtgtgcacataggctatggtggagaatcattg
acgttagcaatggctaaagcggcactgtgtcaagctcttaccatagaaggtgcctgtgga
ttttgtaaaggctgtcagctgattgaagcgaataaccaccctgacttttaccatgttgtg
gccgatggaaatcagataaaggttgatcagataagagaactttgtcaaaaattgacctct
acttcacagcagggggggcgaagagtcgttgtgattagccaatgtgaaaaacttaacttg
gctgcagcaaatgcgctgcttaaaacacttgaggagccaggtaaagagaccttgctactg
ctacaatcgaatactccctcgcgattaatggcaacgattaacagtcgctgtcaacgggtt
cactttcagtctcctagtactgatgagattaaaacttggttggggcaaagtcttgaggtc
agctccgatgttacttggtgtttacctgtgatgggagggcctctagaattagccagcgcc
ctgcaggatcagcggtatgaacacttgcttcagctgaggaaagactggactcaaagtttg
tcctctggtcacctgtgtgctaatttaataaatataaacgaaaagcaagtttctgatgca
attaaagttttatatttaattttaagacagaagctggtaaaacaaactcaattagacgct
ctattgagggttaaagtttcagcgttagcggctaaaatcatgaacacttatcacaaatta
agtgttatgccgaacgtgaactctttggcgctttttcaagggtttatcttagaatataaa
acgctaacttaa
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