Shewanella sp. MTB7: HWQ47_12905
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Entry
HWQ47_12905 CDS
T10730
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shem Shewanella sp. MTB7
Pathway
shem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWQ47_12905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shem03019
]
HWQ47_12905
03400 DNA repair and recombination proteins [BR:
shem03400
]
HWQ47_12905
Enzymes [BR:
shem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HWQ47_12905
Messenger RNA biogenesis [BR:
shem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HWQ47_12905
DNA repair and recombination proteins [BR:
shem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HWQ47_12905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
Pex14_N
Motif
Other DBs
NCBI-ProteinID:
WBJ97921
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All DBs
Position
3026308..3028245
Genome browser
AA seq
645 aa
AA seq
DB search
MQQLLQSHFGFSEFRPGQEQVVQALLNGQSAAAIFPTGSGKSLCYQLPALCLPHLTLVVS
PLLALIQDQIGFLKSKGIAAASIDSAQSREQGNDVMRGVRTGEVKILMISVERLNNERFR
QFIAEVPISLLVVDEAHCISEWGHNFRPDYLKLPRYRQELNIPQTLLLTATATPKVIQDM
GSKFGIQTDNVILTGFYRPNLHLGVKGLRSQEKIDYLSHWLQPRLNSAGIIYVTLQQTAE
QVAAQLSARGIVAKAYHAGMTSDIRQSIQHEFMSGSQGIIVATIAFGMGIDKSDIRFVVH
YDLPKSIENYAQEIGRAGRDGGDSDCLVLANGDNLSTLENFVFGDTPEPSGIAVVLKEII
KASHTHMGTAQPQWEMVLNSLSNQANIRPLSLKTLLVYLELLNIIKPTYSYFAEYKFKFL
IPEAEVIEYFKEERRDFIRAIFSTADRAKIWSSVNFDTLNQSYASDRQRVLKAINYLDEK
GMIELQSKQMTQVYQILDSQFDGQALTATLSARFTDKEISEVARINQLVALFTSTECLSR
QLAHYFADEQMTQDCGVCSPCRGEPAIFPQALYLKPLDEYDVNQVCSDAITKLGAACTPV
LLARFLCGLTTPIFTKLKMRACCGFAQFEKYRFADVKLWATENLK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcaattattgcaatcacattttggcttcagtgaattcaggccaggccaagagcaa
gttgttcaggcgcttcttaacggtcaaagcgcagcagcaatatttccaacaggatcggga
aaatcactttgttatcaacttcccgctctttgtttacctcatttgactttagtggtatct
ccgttgcttgccttgatccaagatcaaataggttttcttaagagcaaaggcatcgccgca
gcgagcattgattcagctcaaagtcgggagcagggtaatgatgtcatgagaggcgttcgc
accggtgaggttaagattttaatgatctcagttgagcggttgaataatgagcgatttagg
cagtttatcgccgaagtgcctatttcacttctagtggttgatgaggcgcattgtatctca
gagtggggtcataattttcgtcctgattatcttaaattgccaagatatcgacaggaatta
aatattccgcaaaccctactgttaacagcaactgcgacaccgaaagtgattcaagacatg
ggcagtaagtttgggatccaaactgacaatgtgattctgacaggtttttatcgtcctaat
ttacacttaggtgttaaagggttgagaagtcaagaaaagatagattatctttctcactgg
ttacaacctcgactcaatagtgcagggatcatctatgtgaccctgcaacaaactgcagag
caggttgccgcacaacttagcgcacgaggcattgtggccaaagcttatcatgcaggcatg
acatctgatattcgccaatctatacaacatgaatttatgtcaggcagtcaggggattatt
gttgctaccatcgctttcggtatgggcatagacaagagtgatatacgctttgttgttcat
tatgatctgcctaaatcgattgaaaattatgctcaagagatcgggcgagcaggtcgagat
ggtggtgactctgactgtctggtactggcgaatggagataatctaagtacattagagaac
tttgtatttggtgacacgcctgagccaagtggtattgcggtggtgttaaaggagatcata
aaagcgtcgcacacgcacatggggacagcacaacctcagtgggaaatggtgctcaatagt
ctctctaatcaagccaatattcggcctttatccttgaagactttattggtgtatttagaa
ctgttaaacatcattaagccaacctatagctacttcgctgagtataaatttaagtttctc
atcccagaagctgaagttattgagtatttcaaagaggagagacgcgattttattcgtgct
attttctcgactgctgatagagctaagatctggtctagtgtcaactttgatacgttaaat
caatcttatgcgagtgacaggcagcgggtattaaaagcgattaattacctcgacgagaaa
gggatgattgaactgcaaagtaagcagatgactcaagtttatcaaattctggacagccag
tttgatgggcaagcactgacagcgacattgtcagcacgctttactgataaggagatcagt
gaagtggccagaatcaatcaactagtggctctatttacctccactgaatgcttgagccgc
cagcttgcgcattactttgctgatgagcagatgactcaagattgtggagtgtgttcacct
tgtcgcggcgaaccagctattttccctcaggctctatatctaaagcctcttgatgaatat
gacgttaatcaagtgtgttcagatgccatcaccaaactcggagctgcatgtacgccagtt
ttgcttgcacgttttctttgtggtttgacgacccctatatttaccaaactcaagatgaga
gcgtgttgtggttttgcacaatttgagaaatatcgatttgccgatgtaaagttgtgggcc
acagaaaacctaaagtag
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