Shewanella sp. MTB7: HWQ47_20275
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Entry
HWQ47_20275 CDS
T10730
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
shem Shewanella sp. MTB7
Brite
KEGG Orthology (KO) [BR:
shem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shem03016
]
HWQ47_20275 (truB)
Enzymes [BR:
shem01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HWQ47_20275 (truB)
Transfer RNA biogenesis [BR:
shem03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HWQ47_20275 (truB)
Prokaryotic type
HWQ47_20275 (truB)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
WBJ94211
LinkDB
All DBs
Position
complement(4674947..4675900)
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AA seq
317 aa
AA seq
DB search
MARRPRGRFIDGIILLDKDTGMSSNFALQRVKRIFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYTVTAKLGERTDTSDSDGEVVQTRPINFTQELLMESLEHFRGETMQ
VPSMYSALKHEGQPLYKYAREGIEVPRKARPINVFELNFISLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTQVAGYPYERMVSLAQLNEMVTQAEADGVEPKSVLDPLL
LPMDTAVSQFKEINLPESLAPYLMNGNPVQASGLEADEIVRITIGDERQFVGIGSMNDDG
MLAPKRLIVIREDEEIV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcgtcctcgtggtcgttttattgatggaattatactcctagataaagatacc
ggcatgagttcgaactttgcgttgcaaagagtcaagcgtattttcaatgccaataaggct
ggacatacgggcgcgctagatccattagcgacagggatgctgcctatttgtctaggagaa
gcaaccaagttttcacaacacctgctagacgcggacaagcgttataccgtgacagctaaa
ctgggtgaaagaaccgacactagtgattctgatggtgaagtggtgcaaacgcgtccaatt
aactttacccaggagcttctgatggagtcgttggagcattttcgtggtgaaactatgcaa
gtgccatcgatgtattctgcgcttaaacatgaaggtcagcctctgtataaatatgcccgt
gaaggcattgaggttcctcgtaaagcacggccgatcaatgtctttgagctaaattttatt
agtttggaaggtgatgagcttacgttagatattcattgctctaaagggacttacatacgc
acaatcactgatgatcttggtgaaatgttaggttgtggcgctcacgtgatcatgttgaga
agaactcaggttgcaggctatccctacgaacgtatggtgagtttagctcagctcaatgag
atggtgactcaagcagaagcagacggtgttgagcctaaatcagtgttagatcctttacta
ttgcctatggacacagctgtcagtcaatttaaagagataaacttaccagagtcgctggct
ccctacttaatgaacggcaatccagttcaagcttctggcttagaagcggatgaaattgtg
cgcattacaataggtgatgagcgtcagtttgtcggcataggcagcatgaatgatgatggc
atgttagcacctaagcgcttaattgtgattcgtgaagacgaagagatcgtttaa
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