Shewanella sp. MTB7: HWQ47_21195
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Entry
HWQ47_21195 CDS
T10730
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
shem Shewanella sp. MTB7
Brite
KEGG Orthology (KO) [BR:
shem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shem03009
]
HWQ47_21195 (srmB)
Enzymes [BR:
shem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HWQ47_21195 (srmB)
Ribosome biogenesis [BR:
shem03009
]
Prokaryotic type
rRNA helicases
HWQ47_21195 (srmB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NAT10_TcmA_helicase
DUF6930
PhoH
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WBJ94358
LinkDB
All DBs
Position
4872176..4873399
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AA seq
407 aa
AA seq
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MQFEDFLLDPILLESLKAMGHIKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPAL
QHIIDFPRRFSGQARVLILTPTRELASQIHRYASHLAYELDLNTVIITGGVPYAPQEEAL
KGNVDILVATPGRLMEYMDKGLFNAEEVEILVIDEADRMLDMGFSAAVETLAIESVGRKQ
TMLFSATLEGSDVGRFSHQLLTNPAKIEAEAPRSEKAKIHQWIHIADDKEHKFKLLCSIL
QQEETKRTIVFVKTRESVASLEGLLQKVGITCSFMRGDMEQKQRFQALGRFTKGEVNVLL
ATDVAARGIDVEDVTHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKI
ERYLDQPLKRRFIKDLRPKNKEAKPPGKNKVKSGEKVFSKKNKKKKK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagacttcctgcttgaccctatattattagagtcattgaaagccatgggc
catattaagcctacaaccatacagcaacaagcgatcccattggccatggatcagcgggac
attcttgcgcgtgcaccgacaggaactggcaaaacggctagtttcttactgccggctcta
caacatattattgacttcccacgtcgattttcaggccaagcccgagtccttattcttacg
ccaacccgtgaactagcgagtcaaatccacagatatgcctctcacttggcttatgagtta
gatttgaatactgtcatcatcactggtggtgtcccttatgctccgcaagaagaagcacta
aaaggcaatgttgatattctagtcgcgacccccggtcgtttaatggaatacatggataaa
gggctatttaacgctgaagaggttgaaattctggttatcgatgaagccgatagaatgctc
gacatgggcttttctgccgcggttgaaaccttagcaatcgaatcagtaggtcgtaaacaa
accatgttattctctgccacattagaaggcagtgacgtaggtcgtttctctcatcaattg
cttactaacccggcaaagattgaagctgaagcacctcgcagtgaaaaagcaaaaatccat
cagtggatccatatagctgatgataaagaacacaaatttaagctcttatgcagtattctt
cagcaagaagagactaagcgaaccatcgtttttgttaagactcgcgaatcagtcgctagc
cttgaaggcttactgcagaaagtcggcatcacctgcagctttatgcgtggtgatatggaa
caaaaacaacgcttccaagcactcggtcgtttcactaaaggcgaagtaaacgtcttgctt
gctaccgatgttgccgcgcgtggtattgatgttgaagacgtcactcatgtaatcaacttt
gatatgccaagatctgccgatacctatgttcaccgcataggccgcacaggtcgtgctggc
gctaaaggcactgcaatctcgctagtcgaagcccatgacattcgtgtcgtaggtaagatt
gaacgctatttagatcaacctcttaaacgtcgatttattaaagatcttagacctaagaat
aaagaagctaagcctccaggaaagaataaagttaaatctggtgagaaagtctttagcaag
aaaaataaaaagaagaaaaagtaa
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