Shewanella sp. MTB7: HWQ47_22185
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Entry
HWQ47_22185 CDS
T10730
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
shem Shewanella sp. MTB7
Brite
KEGG Orthology (KO) [BR:
shem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shem03019
]
HWQ47_22185 (hrpB)
Enzymes [BR:
shem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HWQ47_22185 (hrpB)
Messenger RNA biogenesis [BR:
shem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HWQ47_22185 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_30
DUF5900
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBJ94541
LinkDB
All DBs
Position
complement(5101247..5103778)
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AA seq
843 aa
AA seq
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MDQLPVLSLLTPLREAFSQHHQVILEAPTGAGKSTALPLAMLDWDELKGKILMLEPRRVA
ARSVAHYIASQRGCKVGEEVGYRVRGESRSQASTRLEIVTEGILTRMIQQDPELSGIEMI
IFDEIHERHLTTDLGLALALEIQGSFREDLKILAMSATLSGLSLTELMPNAISLKSEGRS
FPVELAYRACTSPQKNRSPHHWIEHMGRCIVELLNDDCQLSQYSHGSLLAFLPGQGEIMK
LQEFLSSRLDLNQFSICPLYGSLPPRVQDRAIAAATDGKRKVVLSTNVAESSLTIDGITM
VVDSGYKRQASFNARTGVTRLSLKRISQASAAQRCGRAGRLAPGYCLRLWSQEEQGRLLK
ADEPEIVHSDLIPMVLDAACWGVKSLAELPMLTAASKPNESAAWQLLEMLEVVNKQRQIT
SHGRQAYELGCHPRLAHMLLKAKSLSKHSGEHELTGLACILAGTLESRSRGRHGIDIGGY
LREAIQGESGQQVRQWMKKLKVNPELSACIAKASNEDIALLLALAFPDRVAKNRGVSGYL
LANGTGVTLPEHDALSSVDWLVIADFQESEGRTSGRVFLAAQIDATMFKHRLAFLVTKQE
HCGWDDAKGRFYAETQQRIGQIVLSKTAVSKPDPEQIKSAIIEQIHSKGLSLLNMNDKVL
QLQNRLALAAKLDTGSNWPDISDYQLIDTLSDWLGPYLSDVRSLSQLKSLDCYTLLLNQL
EWSDQQRLEALFPCHWPMATGTRAGITYDDGGRALLSVRLQEALGMAQSPVLANGKLTVT
MELLSPAHRPLALTADLASFWQGPYVDVKKEMKGRYPKHLWPEDPANTLPTRFTKKKTLN
QNS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
ttggatcagctacccgtactaagcctgcttactccgctaagagaagccttcagtcagcat
catcaagtgatattagaagcgcccactggtgctggtaaatctaccgcgctacctttagct
atgttggattgggatgagcttaagggcaaaatcttaatgctcgagcctaggcgtgtcgca
gccagaagtgtcgctcactacattgctagccaacgaggctgcaaagtaggtgaagaggtg
ggctaccgggtgcgtggtgaatctcgtagtcaggcatcgacccgattagagatcgtcact
gaagggatcttaacgcgaatgatccaacaagatcctgagttgagcgggatcgagatgatc
attttcgatgagatccatgaacggcatctgaccacagatcttggccttgcgctggcactt
gaaatccaaggctcatttcgtgaagatcttaagattttagctatgtcggctacgctttcc
ggtttgtcgttaactgagttaatgcctaatgctatctcattaaaaagtgaaggccgcagt
tttcccgttgagctcgcttatcgtgcatgcacttcgccgcaaaagaatcgttcaccgcat
cactggattgagcatatgggccgatgcatcgtggagctactcaatgatgactgtcagctt
agccaatatagtcatggctctttgttggcatttcttcctgggcaaggggaaataatgaag
ctgcaggagttcctaagcagtcgcctggatctcaatcagttttcaatatgtccactctat
ggcagcctaccaccaagggtgcaagaccgagcgattgccgctgccactgatggcaagcgt
aaagtggtgttgtcaactaacgtggccgagtcgagtttgaccatagatgggatcactatg
gtggtcgattctggctataagcgacaggcgagcttcaatgccagaaccggtgtgacgcgt
ttgtccctaaagcgtattagtcaggcatctgcagctcaacgttgtggccgtgctggccgt
ttagcccctggttattgcctgcgcctttggagtcaagaggagcagggcagattactcaaa
gccgatgagccagagatagtgcattcagatctcatccctatggtacttgatgctgcttgc
tggggagtcaaatcccttgctgaactgcccatgctcacagcggcatctaagcccaatgaa
agtgcagcttggcagctgttagagatgcttgaggtagtcaataaacagcgacaaatcact
tcccatggacgacaagcctacgagcttggttgtcatcctagattggcgcacatgctgctt
aaggcaaaatctttgtctaagcattcaggcgaacatgagctgacagggcttgcctgtatt
ttggctggaacattagagtctagatcccgtggacgccatggcatcgatatcggtggatat
ctcagagaggcgattcaaggtgagtcggggcagcaggtgcgccagtggatgaaaaaacta
aaggttaatccagaattgtctgcttgtattgctaaggcctctaatgaagatatcgccttg
ctgcttgcgttggcgtttccggatagagtcgcaaaaaatcgcggtgtttctggatatctt
ctggctaacggtaccggcgtgactttgcctgaacatgatgctttgtcttcagttgattgg
ctggtgatcgccgattttcaggagagtgaaggacgaactagcggccgagtgtttttggcg
gcacaaattgatgcaacgatgtttaaacatcgactcgcgtttttggtcaccaaacaagaa
cactgtggttgggacgatgctaaaggccgtttttacgccgaaactcaacagcgtattggc
cagatagtcttaagtaaaacggcggtgagtaaaccagatcccgagcagatcaaatcagcc
attatcgagcagatccacagtaaaggccttagtttgttaaacatgaatgacaaggtacta
cagttgcaaaataggcttgccttagcggctaaactcgatacggggtcaaattggcctgat
atcagtgactatcagcttatcgatacattatctgattggcttggcccctatctcagcgat
gtcagaagcttgtcacaattgaagtcccttgactgttatactctgctgcttaatcagctc
gagtggagtgatcaacagcgattggaggctctttttccctgccattggcccatggcgacc
ggcactcgagctggcatcacctatgatgatggcggtagagcgctgttaagtgtacgcctg
caagaagcattggggatggcccaaagtccagtactcgctaatggtaagctcacggtgacc
atggaattactctccccagcacaccggcctctggcactgacggcagatctggccagtttt
tggcaaggaccctatgttgatgtaaagaaagagatgaaaggtcgataccctaagcatttg
tggcctgaggatccggccaacacattgccgacccgtttcaccaagaaaaagaccttaaat
cagaattcgtaa
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