Shewanella sp. MTB7: HWQ47_23875
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Entry
HWQ47_23875 CDS
T10730
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
shem Shewanella sp. MTB7
Pathway
shem03018
RNA degradation
Brite
Enzymes [BR:
shem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HWQ47_23875 (rnr)
Messenger RNA biogenesis [BR:
shem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWQ47_23875 (rnr)
Transfer RNA biogenesis [BR:
shem03016
]
Prokaryotic type
tRNA degradation factors
HWQ47_23875 (rnr)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WBJ94844
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Position
complement(5468331..5470817)
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AA seq
828 aa
AA seq
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MIKDPHLKREQQNYENPIPSREYILDYLRSETSPLNRERIAAALKLESEEQLEALRRRLR
AMERDGELVFTRGQAYGLPERMDLLTGTIIGHKDGFGFLKLEEGGDDLFINNRDMLMYFH
GDKVLAQKAGVDRKGRREARIVRLVQQRAAALVGRFHLDSGMAFVIADDRRITQEILIPD
EDRNGARQGDIVVLELTRRPGRYVKAAGKVTEVLGQQMAPGMEIEIALRNYDLPHTWSSL
IEKKLRAIPDEVTEDDKKGRIDLRKLPLVTIDGEDARDFDDAVYAEKKKSGGWRLWVAIA
DVSHYVRTESALDKEARARGNSVYFPSQVIPMLPEKISNGLCSLMPEVDRLCMVAEMTIS
AVGKLSGYKFYPAVMHSHARLTYTQVADMLEGGEVSDKLKPILPHLQTLQSLYLTLDKTR
AERGAIAFETTETKFVFNADRKIDSIVPSNRNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHESPSEQKLTNFKDFLKERGLTMDGGLEPTPKDYQAIMEKIADRPDAELIQIMLLR
SMKQATYTPDNEGHFGLALEAYSHFTSPIRRYPDLILHRVIRYLLAKEAGEGKEKWTPGG
GYNYQLEELDLLGVECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTHFGMF
VRLDKLFIDGLVHISSLGSDYYQYDNMRQRLVGETSGQIYQLGDAVTVKVAAVNLDDRQI
ELMMAGEEGKSKRPSRGKKPMTARERVNAEGAKLGKGEKSDKPKRRGSRSKTSASKGSGE
NSLDSGKTSKSGGAKKSGAKTKSAAKKSKAKKSSAKKSTAKSKVKASK
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatccgcatttaaagcgtgaacagcaaaactatgaaaaccccattcctagc
cgtgagtatattttagattacttgcgctctgaaacatcaccccttaaccgtgaacgcata
gccgcagcactcaagcttgaaagtgaagaacagcttgaagcattaagacgtcgactccgt
gcgatggagcgtgacggtgagttggtgtttacccgtggtcaagcttatggcttacctgag
agaatggatctgttaaccggtaccatcataggccataaagatggcttcggcttcctaaag
ttggaagagggcggtgacgacctctttattaataaccgcgacatgttgatgtacttccac
ggcgataaagtgctggcgcaaaaagctggtgtcgatcgcaagggacgccgcgaagccaga
attgtacgtttggttcaacaaagagctgcggcgcttgtgggccgattccacctcgactct
ggtatggcatttgttattgccgatgacagacgtataactcaagagatcttgatcccagat
gaagatcgaaatggtgcacgtcagggcgatatcgttgtgcttgagctgacgcgtcgacct
gggcgttacgttaaagccgcgggtaaggtgactgaagtactcggtcaacagatggctcct
ggcatggagattgaaattgcattgcgcaattatgatctgccccatacctggtctagcctt
atcgagaaaaaactgcgtgcgatccctgatgaagtgaccgaagatgataaaaaaggccgt
atcgacctacgtaaactgcccttagttaccatagatggcgaagatgctcgagatttcgat
gatgcagtttatgctgaaaagaaaaagagtggcggctggcgtttatgggtggctatcgct
gatgtgagccattatgtgcgtacagaatctgcgttagataaagaagcgcgagctcgtggt
aattcagtctattttccatcgcaagtgatccctatgctgccggagaagatatctaacggg
ttatgctcattgatgcctgaggttgatcggctatgtatggtggccgagatgactatctca
gctgtcggtaaactctctggttataagttttatccggcggtgatgcactctcatgcacgg
ctaacttacactcaagttgctgatatgcttgaaggtggagaggtgagtgataaacttaaa
ccgatattgccacaccttcagacgctgcaatctttatatcttaccttagataagactcga
gctgaacgtggtgctattgcatttgaaaccactgaaactaagtttgtgtttaatgcggat
cgcaagatcgacagcatagtgccgagcaaccgcaaccaagcccataagatcattgaagag
tgtatgatcttagctaacgtggcatcagctaagtttgttaagaagcataaaggtgaagtg
ctttaccgagtgcatgagtcaccatcggagcagaaactcaccaactttaaagatttcctt
aaagagcgtggtttgacgatggatggcgggcttgagccaacgcctaaagattatcaggcg
attatggagaagattgctgataggcctgatgctgaattgattcagatcatgttgctcaga
tccatgaaacaggcaacgtatactccagataatgaaggtcactttgggttagcactcgaa
gcatattctcattttacttcgcctatccgtcgttatcctgatctgattctacatcgcgtg
atccgctatctattagcgaaagaggcgggtgaaggaaaagagaagtggacaccaggtggt
ggctataactatcagcttgaagagttagatttgttaggtgtagagtgttcaaccactgag
cgccgtgcagatgaagcaactcgtgatgttagtgactggctaaaatgtgagtttatgcaa
gatcacgtcggcgatacgtttgaagctgtgatcgcctcagtgactcatttcggtatgttc
gttcgtttagataaactgtttatcgatggcttagtgcatatatcgagcctaggcagtgac
tactatcagtacgacaacatgcgtcagcgtcttgtgggtgaaacctcaggtcaaatttat
caacttggcgatgcggtgaccgttaaggtcgcagctgtcaacttagatgatcgccagata
gaattgatgatggcgggcgaagagggtaaatctaaacgcccaagccgtggtaagaagccg
atgactgccagagagcgtgttaacgcagaaggcgccaagctaggcaaaggggaaaagagc
gataagcctaaacgacgtggttctcgctcaaaaaccagtgcgagtaaaggctcaggcgaa
aatagcctagattctggcaaaacaagtaaaagcggtggagctaaaaagtctggcgctaaa
acaaaatcggcagctaagaagtcgaaggctaaaaagtcttcagcaaaaaagagcacggcc
aaaagtaaagtcaaagcaagtaagtaa
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