Shewanella sp. LC6: FJD32_008010
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Entry
FJD32_008010 CDS
T11827
Name
(GenBank) DNA-3-methyladenine glycosylase 2 family protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
shen Shewanella sp. LC6
Pathway
shen03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FJD32_008010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shen03000
]
FJD32_008010
03400 DNA repair and recombination proteins [BR:
shen03400
]
FJD32_008010
Enzymes [BR:
shen01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
FJD32_008010
Transcription factors [BR:
shen03000
]
Prokaryotic type
Helix-turn-helix
AraC family
FJD32_008010
DNA repair and recombination proteins [BR:
shen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FJD32_008010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HTH_3
HhH-GPD
DUF6233
Motif
Other DBs
NCBI-ProteinID:
QQK59443
LinkDB
All DBs
Position
1724002..1725627
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AA seq
541 aa
AA seq
DB search
MKLIAVSPKPTTKPLVVPVVNDLQECYLSATICREARISRDPRFDGKFFVGVLSTGIYCR
TVCPAVAPKEENVRYFDSAIKAAQAGLRPCLRCRPDSAPGSNPWKGTGTTLDRAIGLIEA
GALSGEHGLTVEALADKLGISSRYLNKLFTAGFGTSPKQFALYRQLMFAKQLLHQTQLPI
TQVALAAGFNSIRRFNEAFQQTLQLTPTQLRKSSLKSTAKLEEGERTNKASPQQMPAHSL
SLYQYYRPPLDWPAQLAFYRLRAVAGMEWFSEGANHDSNDMMSQDTLEYGRTLQLEDIRA
VVRIAHEAHLHRFKITLTLTPDSPLAGLQKLITQVRRILDLDADMQLIEHNLQRLTDLKL
IPKSGLRIPGAGSLFEAGCRAVLGQQVSVVQATKLLNLLVEAYGERFSLNGQEYRLFPTP
QVIRHACLDELKMPGARKLALNALAAFICDHPEATADEWIRVKGIGPWTIAYAKLRGLGD
PNIFLHTDLIVKKQLLATMGEQTGLDTEAQKQLDYSAIVERVSADIAPWGSYLTFLLWSN
A
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgatagcagtgagtccaaaaccaaccactaaaccactagtcgtgccggtagta
aacgatttgcaagagtgctacttatccgcgacgatttgccgcgaggctcgcatcagccgt
gatccacgttttgacggtaagttctttgtgggcgtgttaagtacgggcatttactgccga
acggtgtgccctgccgttgcacctaaagaagaaaacgtacgttatttcgactcggccatt
aaagccgcacaggcggggctgaggccttgcctacgttgccgccccgacagtgcaccaggc
tctaatccgtggaaagggacaggcacaaccctagacagagctataggtttgattgaagct
ggcgccttatcgggtgagcatggattaacggtcgaggccttggcggacaaactggggatc
agcagccgttatctaaataagttatttaccgctggatttggcacttcgcctaagcaattt
gcactctatcgtcagttaatgttcgcaaaacagttgttgcatcagacgcagctgcccatc
actcaggttgcgcttgccgcaggctttaacagtattcgccgtttcaacgaggcatttcaa
cagactctgcaattaacgcccacacagttaagaaaatccagtctgaagtcgactgccaag
ttagaggaaggggagagaactaataaggctagtccgcagcagatgccagcgcacagtttg
agtttatatcagtattaccgaccgccgctcgattggccggcgcagttagccttttatcgc
ctgcgcgccgtggcgggaatggagtggtttagtgagggggcaaatcatgactccaacgac
atgatgtcccaagatacacttgagtatggtcgcaccttgcaacttgaggatatccgcgca
gtggtgcgtatcgcccatgaggcacatttgcatcgctttaaaatcacgctgacattaacg
cccgactcgcccttggcgggcctacaaaaactcatcacccaagtgcggcgcattttagat
ctcgatgccgatatgcagctgattgagcacaacctacagcgtttgaccgatcttaagtta
atccctaaatcaggtcttaggatcccgggagcaggatctttatttgaggcgggttgccga
gccgttttaggtcagcaggtgagcgtagtgcaggccactaagttactcaatttattagtc
gaagcctatggcgaacgctttagcttaaacgggcaagagtatcgcttgttccctacaccg
caggtgatccgtcatgcctgcctcgatgagcttaaaatgcctggcgcgcgcaaactggcg
cttaatgcgcttgcggcgtttatctgtgaccacccagaagccacagccgatgagtggatt
agggtaaaaggcattggcccctggaccattgcctatgccaaattacgtgggcttggcgat
ccaaatatcttcctgcacacggatttaattgtgaaaaagcaattactggcgacgatgggt
gagcagacagggttagatactgaagcgcaaaaacaactggattattcagcgattgttgag
cgggtaagtgcggatatcgccccttgggggagttatttgaccttcctgctgtggtccaat
gcatag
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