Shewanella sp. LC6: FJD32_009120
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Entry
FJD32_009120 CDS
T11827
Symbol
msbA
Name
(GenBank) lipid A export permease/ATP-binding protein MsbA
KO
K11085
ATP-binding cassette, subfamily B, bacterial MsbA [EC:
7.5.2.6
]
Organism
shen Shewanella sp. LC6
Pathway
shen02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
shen00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
FJD32_009120 (msbA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shen02000
]
FJD32_009120 (msbA)
Enzymes [BR:
shen01000
]
7. Translocases
7.5 Catalysing the translocation of carbohydrates and their derivatives
7.5.2 Linked to the hydrolysis of a nucleoside triphosphate
7.5.2.6 ABC-type lipid A-core oligosaccharide transporter
FJD32_009120 (msbA)
Transporters [BR:
shen02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
FJD32_009120 (msbA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_22
DEAD
RsgA_GTPase
ABC_ATPase
nSTAND3
AAA_16
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
QQK59650
LinkDB
All DBs
Position
1992780..1994585
Genome browser
AA seq
601 aa
AA seq
DB search
MTAYPKDEMWTVFKRLLAYLKPMKGMFLLSVAGLIVYGLVDAAFISFIGPFIDKGFSSST
PAISNGIALPTNQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQ
QVFQHYLSLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDGVTVIGMLGLMFY
NSWKLSLCILVIGPIMGLVMTIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGG
QETETARFAKINDRNRHQNMKLAIAQAISQPLIMVIGSFALAFVLYAASLDSMKADLTAG
TFATILGAMMAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTLPESDTGTYTVKRAKGNL
RFDNVSFSYEGQERRALDKIDFEVSQGQTLALVGRSGSGKSTIASLVTRFYTGLASGDIL
LDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAME
FIEQLPDGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQ
GLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQFG
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatatcctaaagacgaaatgtggaccgtattcaagcgattactggcctatctc
aaaccgatgaagggcatgtttttgctttcagttgctggccttattgtgtatgggcttgtc
gatgcggcttttatttcttttattggcccttttatcgataaagggttttccagcagtaca
ccagcgataagtaacggtattgcactccccacgaaccaaggctttcatgccgataaccaa
gtgctattaatggcgcctatcgtggttattttaatgttctccctgcgcggctttgcaaac
ttcgtatccacctacggcatttcttatatgagcgctaggttaattatggatatgcgccag
caagtttttcaacattatctaagtttacccgtgagttacatggataaggaaaacacgggc
aatttaatttcaaaagtgaccttcgataccgagcaaattgcccgtgcatcgggcagcgcc
ttgatttcgattgttcgtgacggtgtgaccgttatcggtatgctgggattgatgttttat
aactcttggaagctttcactgtgtattttagtgataggtccgattatgggattagtgatg
actattgtgagtcgccgcttccgtaaggtgtcgaaacaaatccaaacggcgatgggggat
gtcagtgccgcgaccgagcagatgatcaaaggtcataaaaacgtactggcctttggtgga
caagaaacagaaacggctcggtttgccaaaattaatgacagaaaccgtcatcaaaatatg
aaacttgcgatcgcacaggctatcagccagccgcttatcatggtgattggctcctttgcc
ttggcctttgtgctgtatgcggcgagcctagatagcatgaaagccgatttgaccgcaggt
accttcgcgacgattctgggcgcgatgatggccatgctgcaacccatcaaaaacctcacg
cgtgtgaatgccgaatttcaacgtggtattgcagcgtgcaccacagtatttgaactgtta
gacactttgccagaatcggatactggtacttataccgtcaagcgtgctaagggcaactta
cgttttgataatgtttcctttagttacgaaggccaggagcgccgcgctttagataaaatt
gactttgaagtgtcccaagggcaaaccttagccttagtcgggcgctctgggtcggggaag
tcgacgattgcaagcttggtgactcgtttttacaccggactagcgtctggcgatattctg
cttgatgatgtgagtatttatgattactcattgaaatcattacgtagtcaagtggctttg
gtatcgcagcaagtgacactgtttaacgatactattgccaataatatcgcctatgcctat
ccgggcgaagtcacccgcgagcagattattgaggcggcgaccttagctcatgcgatggaa
tttattgagcaattgcccgatggcttagatacccaagtcggtgaaaacggcgtgctattg
tcaggcggtcagaggcaacggattgcgattgcgcgggcaatgttacgtgatgcaccagtg
cttattctggatgaagcgacatcggcccttgatactgaatctgagaaagcgattcagcag
ggattagacaatttgcgccaaaaccgcacctcggttgtgattgctcaccgtttatcaacg
attgaaagtgccgatcaaattttagtagtcgatcaaggtcgcatcgttgagcgtggcacc
cacaaatctctactcgaacttggcggcatgtatgccaagttataccaaatgcagtttggt
agctaa
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