Shewanella sp. LC6: FJD32_010590
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Entry
FJD32_010590 CDS
T11827
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
shen Shewanella sp. LC6
Pathway
shen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FJD32_010590 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shen03400
]
FJD32_010590 (recD)
Enzymes [BR:
shen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FJD32_010590 (recD)
DNA repair and recombination proteins [BR:
shen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FJD32_010590 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
SH3_13
NAT10_TcmA_helicase
AAA_11
AAA_22
UvrD-helicase
AAA_16
SLFN-g3_helicase
DEAD
UvrD_C
AAA_28
TetR_C_13
TraI_hel_assoc_N
nSTAND3
ResIII
PhoH
Flavi_DEAD
DUF7508
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QQK59917
LinkDB
All DBs
Position
complement(2282712..2284877)
Genome browser
AA seq
721 aa
AA seq
DB search
MNHSTEMNSADMNNATALAANWYNAGALRLKAPLAELLKYWEKERLITALDRHFALEMAR
LHPNDAQEPLFMLLCALLSQQLSAQHTCLVLEYIVPTNPMAEPVNRCQIRLSLTELIDAL
QHFDAIGAPNSNKPLIFEDGRLYLERYHHFETQVASALTRLSATALSLTPSQPLASDNQS
LLQLRRQLDCLFPSATQTVEANIDWQKVATATALGRKLAVITGGPGTGKTTTVTKLLLLQ
QLGTPKQIRLVAPTGKAAARLSESIKASKARLEQELKQAQATNELAQNHETQALLAALKQ
VPEEASTLHRLLGVIPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHAGL
ILLGDQDQLASVEAGAVLADICAGLKQASMQHTEWKMRYSQAQAEQLTALTGFNLTPFIH
AEPKIGDSLCMLTHSHRFKGDAGIGLLASAVNHADLAGILAVWQRGLAELTWLEHSVNHS
QTQAKISEPSSNTGLKALLAQACDQYGDYLRLLQPTHATTIHTSEPFCPPSAMEAIAKFN
QYRILCAMRTGDYGVEGINLAVTKALAQAKLIQPQQEFYLGRPIIIQSNDYNLGLFNGDI
GLILQDEERADRLMAHFIKADGKLLKVLPARLPSHETCYAMTVHKSQGSEFNRVALVLPP
NPSLVQWQLLTKELIYTAITRAKQHFSCLGTQQVFERASLQATQRASGLADRLWRDKSII
N
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacagcaccgaaatgaatagcgccgacatgaataacgccacagcccttgcagcc
aattggtacaatgcaggcgcactcagacttaaagcaccactggctgagttgctcaaatat
tgggaaaaagagcggcttatcactgcacttgatcgccattttgccctcgagatggcccgt
cttcaccccaatgacgcccaagagccactgtttatgctgctgtgcgccctgttgagtcag
caactgtcggcccaacatacttgtctagtgctcgaatatatagtgccaaccaatccgatg
gcagagccagtaaaccgctgtcaaatccgtttaagccttactgaactgattgacgcactg
caacactttgacgccattggtgcaccaaatagcaataaaccactgatttttgaagatggt
agactctatcttgagcgttatcatcattttgaaacccaagtcgccagcgccttaacaagg
ttatcagcgacggcgctttcgttaacgccctcgcagcctttagcatcggataatcagtca
cttttacaactacgcaggcaactggattgcttatttccaagcgcaacccaaaccgttgaa
gcaaacatcgattggcaaaaggtcgccaccgctactgcgctcggtagaaagctggcggtg
ataactggtggccccggtacaggtaaaaccaccacggtgactaaattgctgttgttacaa
caattaggtacaccaaagcagataagacttgtcgccccgacaggcaaagcggccgcccgt
ttaagcgaatccattaaggcatctaaagcgagactcgagcaggaacttaagcaggctcaa
gcgacaaacgaactggcgcaaaaccacgaaacccaagccctgttagccgcgcttaagcaa
gtaccggaagaggcatcaaccttacatcgcctgctgggtgtcatccccaactcagcgcat
tttcgccatcatcaaggcaacccattacggctcgatcttttgattgtggatgaagcctcc
atggtcgatttacctatgatgtacaagctgcttagcgcattgccggaacacgcaggctta
atattgctaggggatcaggaccaactcgcttcagttgaggctggcgccgtacttgccgat
atttgcgccggacttaagcaagcctcgatgcaacataccgaatggaaaatgcgttatagc
caagcacaggccgaacaattaaccgcgctcacgggctttaatttaaccccctttatccac
gctgagcctaaaattggcgatagcctgtgtatgttaacccacagccatcgatttaaaggc
gatgccgggattggcttgctagccagcgcagtcaaccatgccgatctcgcgggcatttta
gcggtatggcaaagagggcttgccgaattaacctggctagaacacagcgtaaatcacagc
caaactcaagcaaaaatcagtgaacctagtagcaataccggacttaaagcgctacttgca
caagcctgtgaccaatacggtgactatttgcgcctattacaaccaacgcacgccaccaca
atacacacgagtgagccattttgcccgccaagcgccatggaggcgattgccaaatttaat
caatatcgcattttgtgcgccatgcgaaccggcgattatggtgtcgaagggattaatctt
gcggtgacgaaggcgttagcacaggccaaacttattcagccgcagcaggaattttacctc
gggcgcccgattatcatccaaagcaacgactataacttaggtctgtttaacggtgatatt
ggtttgattttgcaggatgaagagagagctgaccgactgatggcccactttataaaggcc
gatggcaaactgctaaaagtgctacccgcaaggctacctagccacgaaacctgttacgcc
atgacggtacataaaagtcagggcagtgaatttaatcgagtcgccctagtgctcccgcca
aatcctagtctcgttcagtggcaattgctcaccaaagagctgatttacactgctattacc
cgtgcaaaacaacactttagctgtttaggtacacagcaagtcttcgagcgtgctagcttg
caagctacccagcgcgcctcaggtttagcggatagactctggcgcgataagtcgataatc
aattaa
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