Shewanella sp. LC6: FJD32_019420
Help
Entry
FJD32_019420 CDS
T11827
Name
(GenBank) OsmC domain/YcaO domain-containing protein
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
shen Shewanella sp. LC6
Brite
KEGG Orthology (KO) [BR:
shen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shen03009
]
FJD32_019420
Ribosome biogenesis [BR:
shen03009
]
Prokaryotic type
ribosomal protein modification factors
FJD32_019420
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
Motif
Other DBs
NCBI-ProteinID:
QQK61451
LinkDB
All DBs
Position
complement(4276435..4278621)
Genome browser
AA seq
728 aa
AA seq
DB search
MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCK
SRDIPTDNIRLSQNNIVDPEDRYNQIFQINVELPDDISDKDREGILRSIDRCTVKKVVQT
GPEFRIETVENLDADANAMLMGHPAGESSTYILGKDLPLEQTIANMTAMLADLGMKIEIS
SWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNNNFFYNDQFFGVE
IASSEFVHYPNEKWFALEEDDSLPAGLLDDYCLEIYNPDEELCGSHLIDTNSGNRERGIC
AIPYTRKSDGETVYFPSNLIENLFLSNGMSAGNNLKEAEVQCLSEIFERAVKRQIIEQEI
VLPDVPMSVLEKYPSILAGIKGLEEQGFQVVVKDASLGGQFPVMCVTLMNPKTGGVFASF
GAHPSFEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVSEPENFVEHFIDSTGVISWRF
FSSKHDYEFCEWDFSGTNEEEADRLFGILEELGKEVYVAEFTQLGASACRILVPDYSEVY
PVEDLIWDNTNKALDYREDILNLHSLSTKQLVNLVNRLEESQLDNYTDIRTLIGIVFDEN
TVWGKLTIIELKILIYLALGAHEEALELVGEFLQFNDNTVKRNLFFQAMSAVLEVTLDED
LELEDFSHNFTRMFGAEVMEQVVGSVTGKVRFSGLTKTSMQLEGIEPHLRLIESYKKLHA
ARKAKAAN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaagttaattttctcgacaacctgagactcgaagccaagttcgacgatttt
acggtaacggccgatcagcccattcgttataagggcgacggctcggcgccgagtcccttc
gactacttcttagcttcttcggcgctgtgtgcggcctactttgtgaaggtatattgtaaa
tcccgcgatattccgacggacaatatccgcctgtcgcaaaacaatattgtcgacccagaa
gatcgctataaccagattttccagatcaatgtcgaattgcccgatgatatttcggataaa
gaccgcgaaggtattctgcgctctatcgaccgctgcacagtgaaaaaagtagtgcagact
ggcccagaatttagaatcgaaaccgttgaaaacctcgatgccgatgccaatgccatgttg
atgggtcatcccgcgggagagagcagcacctatattttgggcaaagatttaccgctggag
cagaccattgccaatatgacggcgatgctcgccgatttggggatgaagattgagatctcc
tcatggcgcaatattgtgcccaatgtgtggtcactgcatatccgtgatgccgcatcgccc
atgtgttttaccaatggtaaaggcgcaaccaaagagagcgcgctgtgctcggccctcggc
gagtttatcgagcgtttaaacaataacttcttctataacgatcaattctttggggttgag
atcgcgagtagcgagtttgtgcattacccgaatgaaaaatggtttgctttagaagaggac
gattcgctgccagcgggattgttagatgattattgcctcgagatttacaatcccgatgag
gagctgtgtggctcgcatcttatcgacactaactcgggcaatcgtgaacgtggtatttgt
gcgattccttatacccgtaaatccgatggcgagactgtgtactttccatcaaacctgatt
gaaaacctgttcttaagcaacggcatgagcgcgggtaataacctgaaagaagccgaagtg
cagtgtctctctgagatattcgagcgcgcggtgaaacgccaaatcatcgagcaggaaatc
gtcctgccagacgtgcctatgtcggtgttagaaaaatacccaagcattcttgcgggcatt
aagggtttagaagaacaaggcttccaagtggtggtgaaagacgcctccttaggcggccag
ttccctgtgatgtgcgtgacgctgatgaacccgaaaaccggcggcgtatttgcctccttc
ggcgcccacccaagctttgaagtggcattggagcgcagcctaaccgaattacttcaaggt
cgcagcttcgaaggcttaaacgatgtgccaaaaccgacctttaacagcatggcggtgagc
gagccagaaaactttgtcgagcactttatcgactcaacaggggtgatctcttggcgcttc
tttagcagcaagcatgactatgagttctgcgaatgggatttctccggcaccaacgaagag
gaagcggaccgcttattcggcattttagaagagctgggtaaagaggtgtatgttgccgaa
tttacccagttaggcgcatcggcttgccgtattttagtccctgattactctgaggtttat
ccagttgaagacctgatttgggataacaccaacaaagcgctggattaccgtgaagatatt
ctgaatctgcattctctaagcactaagcaattggttaacctagtcaatcgtttagaggaa
agtcagctcgataactacaccgatattcgtaccctgattggtatcgtcttcgatgaaaat
accgtctggggcaagttaacgattatcgaacttaagatcctgatttatctagcactcggc
gcgcatgaagaggcgctcgaattagtcggtgagttcctgcaatttaacgacaatactgtg
aagcgcaatctgttcttccaagcaatgagcgcggtactggaagtgacactggatgaagac
cttgaactcgaagactttagccataactttacccgcatgtttggcgcggaagtgatggaa
caagtggtcggcagcgttactggtaaagtccgtttcagcggcttgactaagaccagcatg
cagctcgaagggattgagccacatttacgcttaattgaaagctataagaaactgcacgcc
gcccgcaaggccaaagcagcgaactaa
DBGET
integrated database retrieval system
