Shewanella sp. LC6: FJD32_020155
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Entry
FJD32_020155 CDS
T11827
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
shen Shewanella sp. LC6
Brite
KEGG Orthology (KO) [BR:
shen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shen03021
]
FJD32_020155 (rapA)
Transcription machinery [BR:
shen03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
FJD32_020155 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
ApoC-I
Motif
Other DBs
NCBI-ProteinID:
QQK61585
LinkDB
All DBs
Position
4440945..4443851
Genome browser
AA seq
968 aa
AA seq
DB search
MPFALGQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFSRNEAPLTRVIYNPGDT
VESHEGWSLSVEELTEKDGLVVYHGIHSETGEKTSLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGIRYQCQLLRNQLATSDLLGLQGPRVGLIPHQMWIAHEVGRRYAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERVLIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFAD
HDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLEWTEDAPSRAYQVVEAL
SEVVPGVLLLTATPDQLGHESHFARLRLLDPDRFYDYDAFLAEENSYKDVAIAAEALAGE
SKLSDTAINSLTELLSEKDIAPSIRLIQAEGIDSELQQAARSELLQELLDRHGTGRVLYR
NSRASVKGFPKRIFNAYPHAMPEQYLTAARVNEMMGGRKTLEAKAAQALSPEKLYQEFED
NSASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQEDGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQKNDIQIHLPYLQDTAQERLLQWYHQGLNAFELTCPGGHILFSEFAEDLLNVLVGGDE
DELTNLLNHTQSRYKELKHAMEQGRDKLLEINSHGGDKAKAIVERLAQSDQDTKLIGSVI
RLWDIIGVDQEDKGENSIILRPSEHMMFPTYPGLHEDGVTVTFDRDTALSRDDIALITQE
HPLVQTGLDLITSSDTGTTSVAILKNKALPAGTLFLELIYMADASAPKSSQLYRYLPPTP
IRILLDKNGNDLSAKVDYTSFDKQLSAVNRHIGSKLVTASQPILHPLFAKGEEYAQVAVN
ELVAQAREKMTSQLTGELERLESLKAVNPNIREEELEYLRNQIRELTTYLDASQLQLDAI
RMVLVSHV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttgccttaggacaacgttggataagtgataccgagtcagagcttggtttagga
acagtcgtacaagttgaaggccgcatggtcacagtgttattccctgcgactggtgagaac
cgtatgttctcgcgtaacgaagccccgctgacccgcgtcatatacaaccctggcgatacg
gttgaaagccatgaaggctggagtctctcggtcgaagaactcaccgaaaaagacggtctc
gtcgtctaccacggaatccacagcgaaacaggtgagaaaaccagcctgcgtgagaccctg
ttaaaccacaacattcgttttaacaaaccgcaggatcgcctgtttgcgggtcagattgac
cgcctcgatcgtttcggcattcgttaccaatgccagttactgcgcaatcaactggcgacc
tctgatttactcggcttacaagggccacgcgttggtcttatcccccatcaaatgtggatt
gcccatgaagtgggtcgccgttatgcgccgcgggtgttgctggccgacgaagtgggtttg
ggtaaaaccatcgaagcagggctaattatccaccaacaactgctgacaggccgtgccgaa
cgagtattgattattgtgccggataccctgcgccatcagtggttagtggaaatgctgcgc
cgctttaacttgcgcttctccgtgtttgatgaagaccgttgcgttgaagcctttgccgac
catgacaaccctttctataccgaacagttagtgatttgttcactcgaattactgcgcaaa
aagaaacgtctcgaccaagcactcgatgccgattgggatctgttagtggttgatgaagcg
caccatttagagtggaccgaagacgccccaagccgcgcctaccaagtggttgaagcctta
agcgaagtcgtaccgggcgtattattactgaccgcaacaccggatcaactcggtcacgag
agccattttgcgcgcttgcgcctactcgacccagatcgtttctatgactacgacgccttc
cttgctgaagaaaacagctacaaagatgtcgccatcgccgccgaagctttagcgggcgaa
agcaaattatccgataccgctatcaacagcttaaccgaattactcagcgaaaaagacata
gcgccgagcattcggttaattcaagccgaaggcatcgacagcgaattgcaacaagcggcg
cgcagcgaattactgcaagaactgcttgatcgccacggcactggccgcgtgctttaccgc
aacagccgcgcctcggtaaaaggttttccgaaacgtattttcaacgcctatccccatgcg
atgcctgagcagtatcttaccgctgcacgcgtgaatgagatgatgggcggtcgtaaaacc
ttagaagcgaaagcggcacaagccttaagccctgaaaaactctatcaagaatttgaagac
aacagcgccagttggtggaaattcgatcctcgcgtggattggttaatcgagtttttaaag
tcgcaccgcagcaagaaagtgctgattatcgccagtggcgccgataccgccctgagctta
gaagaagccctgcgtacccgtgaaggcattcaagcgaccgtattccacgaaggcatgtcg
atcatcgagcgcgataaagcgggtgcttactttgcccaagaagacggcggcgctcaggcg
ttaatctgttcagaaattggttctgaaggtcgtaacttccagtttgccagccacttagtg
ttgttcgatctgccattaaacccagatttattggagcagcgtatcggccgtttggaccgt
attggtcaaaagaacgatatccaaattcacttgccttatctgcaagatacggcacaggag
cgtttactccaatggtatcaccaaggtctaaatgccttcgagcttacctgccctggcggc
catatacttttcagtgaatttgccgaagatctgttaaatgtccttgtcggcggtgatgaa
gatgagctaaccaatctgctcaaccacacccaaagccgttacaaagaactgaaacacgcc
atggagcaaggccgtgataaactgctggaaatcaactcccatggcggcgataaagccaaa
gcgattgtcgagcgtttagcccaaagcgatcaagatactaagctgattggttcggtgatc
cgcttgtgggacattatcggtgtcgaccaggaagataaaggcgaaaactcgatcatcctg
cgtccaagcgagcatatgatgttcccgacttatcccggcctgcatgaggatggcgttacc
gtcaccttcgaccgtgataccgcactctcccgtgatgatattgccttgatcacccaagag
catccactggtgcaaaccggcctcgacttgatcactagctcggataccggtaccacaagt
gttgcgatattaaaaaacaaggcattgcctgcgggcaccctgtttttagaactgatttat
atggcagatgcctcggcgcctaaatcgagccagctctatcgttatctaccgcctacgcca
atccgtattctgctggataaaaatggcaacgatctgtcagccaaggtcgattacaccagt
tttgacaaacagttaagcgcggtaaaccgtcatattggtagcaagttagtcacggcctca
cagccaattctgcatccgttatttgctaaaggcgaagagtatgcccaagtggccgtcaat
gaattagtggctcaagcgcgcgagaagatgaccagccagcttacaggcgaactcgaacgt
ttagagtccctcaaagcggtcaaccccaatatccgtgaggaagaattagaatacctacgc
aaccaaatacgggagctgaccacttacctcgatgcgagtcagttgcagcttgatgcgatt
cgtatggtgctagttagccatgtttaa
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