Shewanella sp. LC6: FJD32_020975
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Entry
FJD32_020975 CDS
T11827
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
shen Shewanella sp. LC6
Pathway
shen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJD32_020975 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shen03019
]
FJD32_020975 (rhlB)
Enzymes [BR:
shen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJD32_020975 (rhlB)
Messenger RNA biogenesis [BR:
shen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJD32_020975 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
QQK61737
LinkDB
All DBs
Position
complement(4623193..4624512)
Genome browser
AA seq
439 aa
AA seq
DB search
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPVPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
CEEYALNLPAIETYINHSIPVSNYDRDALLDDIPQPAKIHRKHPAGARNLRERSGAGRPQ
GAHRSGGRPPRHDRTRRQP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaacacatttatcaaatcaaaaatttgccgacttacctctgcatcctgaggtt
aaacaggcccttgccgagaacggctttgaattttgtacgccgattcaggcgttatcatta
cccgtattacttcaatcaaaagatatcgctggccaagctcagacgggcactggcaagaca
atggcgtttttggttgccacatttaaccatttattgtcgacccctgttcctgaagggcgt
caattaaatcaaccgcgtgccattatcatggcgcccacccgtgaattagccattcaaatt
gctaaggacgcgattttactcgcgaaacatactcgcttaaaggtggggattgtttacggt
ggtgagagttacgacgtccaacgtaaagtgctcgaccaaggtgttgacatcttaatcggc
acaaccggacggattattgattatgtgcgtcagggcattattagcttaaatgcgattcaa
gccgtggtgttagatgaagccgatcgtatgttcgacctcggttttatcaaggatattcgt
ttcttattccgacgcatgcctaatgccgatcagcgcctgaacatgttgttttcagcgacg
ctttcaatgaaggtgcaagagttggcttatgatcatatgaatgatccggtgaaagtcgaa
attgcccccgaagaaaaaacctcaaagaatatcaaagaagaaattttctatccttcccaa
gaagataagatgcgtttattgctaacgctgattgaagaagattggcctgagaaagccatt
gttttttcaaacactaagcacagctgtgaaaacctatggtcttggcttgaaggggatggt
catcgcgtcggtttgctgacgggtgatgtgccgcagaagaagcgtattcgcattctcgag
caatttacccaaggccaattagatattctggtcgcgactgacgttgccgcgcgcggactg
catatttccgatgtttcccatgtttacaattatgatttacctgatgattgtgaagattac
gttcaccgtattggtcgtactgggcgagcagggaacaaaggggtatcagttagttttgcc
tgtgaggaatacgcactaaacttaccagcgattgagacttatattaatcactcaatccca
gtgagtaattatgaccgcgatgcgttactggatgatattccacagcctgctaagattcat
cgtaaacatccagcgggagctcgtaatttacgtgagcgctcaggagcagggcgaccacaa
ggtgcccatcgtagtggtggacgtccacctcgccatgacaggacgcgtagacagccttaa
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