Shewanella sp. Pdp11: AYJ58_00235
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Entry
AYJ58_00235 CDS
T11329
Name
(GenBank) TonB-dependent receptor
KO
K02014
iron complex outermembrane recepter protein
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shep02000
]
AYJ58_00235
Transporters [BR:
shep02000
]
Other transporters
Pores ion channels [TC:
1
]
AYJ58_00235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
OMP_b-brl_3
OMP_b-brl
Motif
Other DBs
NCBI-ProteinID:
AUD58010
LinkDB
All DBs
Position
48312..50420
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AA seq
702 aa
AA seq
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MSTKDIFRVSLIQIAILSVLTQTVYAEESTPNIEHLEVKGIRQPFRGDVPLKAQPQAVES
LSMEQISDAGISTLMDALDLSSSVNRQNNFGGMWDSFAVRGFVGDENVPSGYLVNGYDAG
RGFGGTRDTANVESIEIMKGPGSALYGRAEPGGTINIITKKPKFSQEGYLQASAGRWDNY
RLEGDYTNAITDDLAFRVNGAIEDKGSFRNPVNSEKRVLTPSLLWVASDTTRLSYELEYA
NQKVPFDRGIVAIDGDIKALPIDRYLGEASDGATQIDLLAHQFTLEHDFADWSLLSGISY
RDTGLEGYSSDPELVKSRQMLNIDGETLSRQHNYRNFTSTDLSGRVELSGKVETGDISHH
LLIGADGYHFHFDKYWERFRPAAGDTTYSINVYNPVYGQIAPEGALLYNQVETQDNYGIY
LQDQLDLSEKWKLTLGGRFDSFEQSIENHKNQTESNQTQNVFSPRAGIVYEWQPWLSLYG
SYSEGFRPNTGSDSRGVAFEPEESKSYELGTKFELENLTGSIALFRAEKSNVLTADPVNS
GFSAALGKADSQGIELDLAAYLTANTQLLLSYAYTDAKTANDILNADWGVSIPEGSRLIN
IPKHNGHLTLKHDTSLFGSDASAGATLLYVGDRLGETIDPNYILPAYTLVNLFSTYALNQ
DLSLQFNITNLFDEVYYQSSYSSMWTMPGEPRSYKVSVRYNF
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtctactaaagacatttttcgtgtatcccttattcaaatcgccatcttaagcgtgctt
actcaaacagtttatgccgaagaatccacgcctaatatcgaacacctcgaagtcaaaggt
atccgccaaccatttcggggggatgtgccactgaaagctcagccgcaggcggtagaaagc
ctgtcgatggagcaaattagcgatgcgggtatatcgacgctgatggatgcgttggattta
tcaagctcagtcaatcgccaaaataattttggtggtatgtgggatagtttcgccgtgcgc
ggctttgtgggcgatgaaaacgtcccctcgggttatctagttaatggttatgatgcggga
cgtggttttggtggtacccgtgatactgcgaacgtagaaagtatcgagatcatgaaaggc
ccaggttctgctctttatggccgcgcagaacccggtggcaccattaatatcatcaccaaa
aaacctaaattttcccaagaaggctatctgcaagccagtgccggtcgctgggataattac
cgtcttgagggggattatactaacgccattaccgacgatttagcctttagggttaacggt
gcgattgaagacaagggtagtttccgcaatcccgttaattcggaaaaacgtgttttaacc
ccttctttgctttgggtagccagcgataccacgcgtctaagctatgaactggaatatgca
aaccaaaaagtccccttcgaccgcgggattgtggctatcgacggcgatattaaagcctta
cccattgatagatatctaggtgaggccagcgatggtgcgacccaaatagatttgttagcc
caccaatttaccttagaacatgactttgctgattggagtttgttatcgggtattagctac
cgcgacacaggacttgaaggctactcaagcgatccagagttggtaaaaagtcgtcaaatg
ctcaacatcgacggtgaaaccctaagccgtcaacataactaccgtaacttcacctcaact
gacttatcgggccgcgttgagctaagcggcaaagtcgagaccggcgatattagccaccac
cttctcattggcgcagacggttatcacttccatttcgacaaatattgggagcgcttccgc
ccagccgctggcgataccacttacagtatcaatgtttacaatccagtctatggacaaatt
gcgcccgaaggcgccttgctctacaaccaagtagagactcaggataactatgggatctat
cttcaggaccaactcgatctcagcgaaaaatggaagctcaccttaggtggccgctttgac
agtttcgagcaaagcattgaaaaccataaaaaccagacagaatccaatcaaacccaaaat
gtctttagtccaagagccggtatcgtttacgaatggcaaccttggttaagcctctatggc
agttactctgaaggttttcgccctaacacaggttctgattctcgcggtgtcgcattcgaa
cccgaagagagtaaatcctatgagctaggtactaagtttgagttagaaaatctgacaggc
tctatcgccctcttccgcgccgaaaagagtaatgtgctaactgcagaccctgtgaattca
ggtttttcagcggcactaggtaaagccgatagccaagggattgagctggatttggctgcc
tacctaacagccaatactcagctgttgctatcctacgcttataccgatgccaagacggct
aacgatattctcaacgcagattggggcgtgagcattcccgaaggcagtcgtttaatcaac
attccaaaacacaatggtcatctcacgctaaaacatgatacttcattgtttggttccgat
gcctccgcgggagcgacattgctttatgtgggcgatcgcttaggtgaaaccattgatcca
aactacatactgccggcatataccttagtgaacctatttagcacctacgcgttaaatcag
gatcttagcctgcaatttaatatcactaacctgttcgacgaagtttactatcaaagctct
tattcatcgatgtggactatgcctggcgagccacgcagctacaaagtcagcgtgcgttat
aatttctaa
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