Shewanella sp. Pdp11: AYJ58_00425
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Entry
AYJ58_00425 CDS
T11329
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03420
Nucleotide excision repair
shep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYJ58_00425 (uvrD)
03430 Mismatch repair
AYJ58_00425 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_00425 (uvrD)
Enzymes [BR:
shep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYJ58_00425 (uvrD)
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYJ58_00425 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AYJ58_00425 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
AUD58044
LinkDB
All DBs
Position
complement(87370..89538)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQV
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPLEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPSATTIRLEQNYRSKGNILKASNALIANN
PERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPRGIGD
RTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFMDLIMTMREDTQDMVLYRM
ADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFELPEELEDMGELNGFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
TQKSAATNDTGFNVGQRVNHPKFGEGKVTNFEGSGAQGRVQVSFTDFGSKWLVVAYARLE
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctgaatgataagcagcgcgaggctgtcgcggca
ccgcaatctagcatgttagtgttggcgggcgcgggcagtggtaaaactcgggtgttgacc
caccgcattgcgtggctgatgcaggttgaacagcagagtccttactcgattcttgcggtg
acatttaccaataaagctgcggctgagatgcgcgagcgagttgaaaaagtcgctggcact
aatatgggccgcatgtggattggcacgttccacggcttggcgcatcgcttgttacgcact
cacttccaagatgcgggtttaccgcaaagcttccaaatcctcgattctgacgatcaagtg
cgcttgatcaaacgtattcttaaaagcttgaatttggatgagaaacaatatcctccacgc
caagctcagggttatatcaatggtaaaaaagaccaaggattacgccctaaacatatcgat
gcgggcggttttccgcttgagcagaatctgctaaaaatctatcaggtctaccaagagtct
tgcgaccgcgcgggtttagtcgattttgccgaaatcctattacgtgcccatgagttatgg
ctcaataagccgcacttgttggcccattatcaagacagatttaagcatattttggtggac
gagttccaagataccaacgcgatccaatatgcgtggatccgcgtgcttgccggtcaaact
gccaatgtgatgatagtgggtgatgacgaccaatcgatttacggttggcgcggtgctcag
gttgaaaacctacaccgattcttaaaagatttcccgagtgcgaccacgattcgcctcgag
caaaactatcgctcgaagggcaatatccttaaagcgtccaacgccttaatcgccaataac
ccagaacgtatgggcaaagagttgtggacggatgaagccgatggcgatccgatttcgctc
tattgcgcctttaatgaaatggacgaggcgcgctttatagtcggccggattaatgattgg
cacgaaaagggcggcaacctcagcgattgtgcgattttatatcgttctaacgctcagtcg
cgggtattggaagaagccttattacacaaaggtttagcctatcgaatctacggtggttta
cgcttcttcgaacgccaagaaattaaagatgccatgggttacctgcggttgattaataac
aaagacgacgatgcggcgttcgagcgtgtggtgaatacgccgccccgtggcattggcgat
cgcactttggatattttgcgctccactgcgcgccagcatgagttaaccctgtggcaggcg
agtgtgcgtttgctcgacgagaaagtgctcgcgggccgcgcagcaaattctgtgcgtggt
ttcatggacttaatcatgacgatgcgtgaagacacccaagatatggtgctgtatcgcatg
gccgatacagtgatccaagcttcgggtcttaaggccatgtatgaggccgaaaagggcgaa
aaagcccacgctagaatcgaaaacttagaagaattagtcacagcggcacgtacttttgag
ctaccagaagagctggaggacatgggcgaacttaacggtttcctgtcccacgcggcgctc
gaagcgggcgaaggccaagccgatgcctttaccgatgcggtgcagctaatgacgctgcat
tctgccaaagggctagagttcactatggtgttcatggcgggggtcgaagaagggatcttc
ccgagtaaaatggcgctcgaagagggcgatagactcgatgaagaacgccgcctctgctat
gtgggcatgacccgcgccatggaaaaactctatattacctatgcggaatcgcgccgcatt
tatggccgcgaagattacgcgaggccatcgcgttttatcaaagagatcccaccgcaatat
gtggatgaaattcgcctcaaggcgcaggtttcaaccccgatggcgaataatcgttttagc
acccaaaagtcggcagccacaaacgatacgggtttcaacgtcggccaacgagtcaatcac
cctaaatttggtgaaggcaaggtgaccaactttgagggcagcggcgcccaagggcgagta
caagtgagctttactgactttggcagcaagtggttagtcgtggcttacgctcgtttagaa
gcactgtga
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integrated database retrieval system
