Shewanella sp. Pdp11: AYJ58_00765
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Entry
AYJ58_00765 CDS
T11329
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ58_00765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shep03019
]
AYJ58_00765
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_00765
Enzymes [BR:
shep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYJ58_00765
Messenger RNA biogenesis [BR:
shep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYJ58_00765
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYJ58_00765
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CpeT
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AUD58105
LinkDB
All DBs
Position
complement(170161..171984)
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AA seq
607 aa
AA seq
DB search
MEKLVLDTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLP
ALMMNGITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLY
VSPERLLTADFIERMQSLQLAMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPYVPMMAL
TATADQATRQSICERLGIDPFRLLSSFDRPNIRYTVAEKLNAANQLRHFLTQQNGTNGII
YCSSRRRVDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDAQKVLS
CIFRLGQRFGINHLIEVLRGSKGAPIVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDVTRGSSITLNPSARPVLKGEVALMLAEPRIQLTTTKRKASQSKAPLNYDRKLFARL
KLLRRTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI
EAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctcgtactcgacacgcatgatgatccgctctcgcaacgccttgcacaggtg
tttggttaccgtgactttagggacggtcagcgggaggtgatagaacgtgtttgcggcggg
caagattgcttagtgattatgccaacgggcggcggtaagagtttatgttatcagctgccc
gctttgatgatgaatggcatcactattgtcgtttccccattgatttctttgatgaaagat
caagtcgatagtttattgcaaaccggcgttgcagcggcttatctcaattcttctttgccg
cgcgagcagagtgccgaagtgttaaggcaactgcgccacggtgagttaaaactactttat
gtgtcacctgagcgcttattaaccgctgattttattgagcgtatgcagtcgttgcagttg
gcgatgtttgccatcgatgaggcgcattgtattagccagtggggtcatgattttcgccct
gaatatgcggcgcttggccagctaaagcaactttttccctatgtgcccatgatggcgctg
acggcaacggcggaccaggcgactcggcagagtatttgtgagcgactcgggattgacccg
ttccgtctgctttcgagtttcgacagacctaatattcgctatactgtcgccgaaaagctt
aatgcagctaatcagttacggcattttctaacccagcagaatggcaccaacggcattatt
tattgcagcagtcgtcgccgtgtcgacgaagtagccgatcgtttatgtctgcaaggtttt
aatgctaaggcctatcatgcgggaatgacgcaggaagaccgtggcgcagtgcaagatagt
ttccttaaagaccaaatcgatatcgtggtcgccactgtggctttcggtatgggaattaac
aagtcgaatgtgcgctttgtggtgcattacgatatcccgaaaagtatcgaagcctattat
caggaaactggccgagcgggccgtgatgggctcgatgcagaagcttttatgttgttcgat
cccgccgatattggtcgggtcagacatttgattgaacagtccgagcctgggccgcagcaa
caggtcgaattccacaaacttaatactatggccgcctttgccgaggcgcagacctgtcgc
cgccaagtgttgctgcattactttgatgagagcgcactagagccctgtggtaactgcgat
atttgcctcgacccgcctaagcgttataacggcactgaagatgcgcaaaaggtgttgtca
tgtattttccgtttaggacaacgttttggtatcaatcacttaattgaagtgttgcgcggc
tcgaaaggcgcaccgatagtcgatcgagggcatgacaaactcacgacttgggggattggt
aaagacaagagccatgaatattggttgagcgtgatccgtcaattgatccatttgggactg
gcgagtcaagatgtgactcgcggttcatctattaccttaaacccatcggcacgacctgta
ctcaaaggggaggtggcgttaatgctcgccgaaccgcgtattcagttaacgaccacaaaa
cgtaaggcgagtcagtctaaagcaccgttgaactatgaccgtaagttgttcgcacggttg
aagttattgcgtagaactattgccgagcagcaggatgtaccgccgtatttagtgtttaac
gatgcaacgctggcggaaatggcggccatgatgccgaccagtgcaggggaaatgctcgcc
gttaacggagtgggcgagcgtaaactgagtcgtttcggtgacgcttttctcgatgaaatt
gaggcttatttagcgggagaataa
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