KEGG   Shewanella sp. Pdp11: AYJ58_00850
Entry
AYJ58_00850       CDS       T11329                                 
Name
(GenBank) multidrug MFS transporter
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
shep  Shewanella sp. Pdp11
Pathway
shep03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AYJ58_00850
   03460 Fanconi anemia pathway
    AYJ58_00850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shep03032]
    AYJ58_00850
   03400 DNA repair and recombination proteins [BR:shep03400]
    AYJ58_00850
DNA replication proteins [BR:shep03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    AYJ58_00850
DNA repair and recombination proteins [BR:shep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     AYJ58_00850
SSDB
Motif
Pfam: ERCC4 HHH_5 HHH_2 HHH HHH_3 UPF0758_N 5_3_exonuc Cdd1
Other DBs
NCBI-ProteinID: AUD58122
LinkDB
Position
187164..187802
AA seq 212 aa
MAAAKIPLFYDDREHAEKIIYELSLHEDLSLIKKHLKLGDYQLNGWLIERKTLPDLVQSL
CDGRLFSQVARLAQSPNHTALLIEGYTQDIACYQIRREALIGALCSISINFHIPILRSLS
QTETAKILYFCATQLNRREHELTLTGRKPKRKKNQQLFILQSLPEVGPKLANKLLCHFAS
VEAVVTASEEALMQVGGIGKNKASKIREVLTR
NT seq 639 nt   +upstreamnt  +downstreamnt
ttggcagcagctaaaatccctctcttttatgacgatagagaacatgcagaaaaaatcatc
tatgagctgtcactgcacgaagatctctcactcatcaaaaaacacctaaaattgggtgat
tatcaactcaatggttggctgattgaacgtaaaaccttgcccgatctcgtgcaatcatta
tgcgatgggcgcctattctcacaggtggccagattagcccagagcccaaatcatactgcc
ctgcttatcgaaggttatacacaagatatcgcatgttaccagatacgcagagaagcgtta
atcggggcgctgtgctcgatttcaatcaatttccacatcccaatactgcgcagtttatcg
caaactgaaacagctaaaattctgtatttttgcgccactcagttaaacagaagagaacat
gaattaaccctcacgggacgtaagcccaaacgcaagaaaaatcagcaattattcatcttg
caaagcctacccgaggtaggccctaaactcgccaataaacttttatgccatttcgccagt
gtcgaggcagtcgtaacagcatctgaagaggcattgatgcaagtgggtggtataggtaaa
aataaagcaagtaagatccgtgaagtgctgactcgctaa

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