Shewanella sp. Pdp11: AYJ58_01420
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Entry
AYJ58_01420 CDS
T11329
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shep03000
]
AYJ58_01420
Transcription factors [BR:
shep03000
]
Prokaryotic type
Helix-turn-helix
Other families
AYJ58_01420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
AAA_5
PAS_4
AAA_2
Mg_chelatase
AAA_3
PAS
HTH_22
nSTAND6
HTH_1
RsmI_C
AAA_7
AAA_19
HTH_50
Motif
Other DBs
NCBI-ProteinID:
AUD58229
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Position
complement(309853..311796)
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AA seq
647 aa
AA seq
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MTVKPHLPSTQAWLADSWQRSIGAGLSEFQLPQELRLDASELKQKHEQYQMLIALVESHA
LPLFNQLMAHSNSRLLLSDAEGYVLRHWGVSRYSTKLADVALDIGVNWLEQHKGTNAIGT
ALTAKQAVSVVGEQHFIRQNRFMSCTACPIFSPQGEMLGVIDITSEQQRHTQQTLMLVSS
LAQQVETALLCHLPDSHYRIDLAAQPNLLSSGWQGIVIADSDGRIVGYNPMAKQLLNQAK
VGDSVEQYLGDNWSRAGGFNQHLDLHLQTQSLNIPSAKSRVAMSNKSLNQLGVRFHDPQL
ERAWQHANKVITKQIPLLVLGETGVGKEQFVKKLHAHSVRRSEPLVAVNCAALPAELVES
ELFGYQAGAFTGANRTGFIGKIRQAHGGFLFLDEIGEMPLAAQSRLLRVLQEREVVPVGS
NQSFKVDIQIIAATHMDLEQQVAQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHR
KHRIAPQAICPELLGLLVQHDWPGNLRELDNLMQVACLMAEGDDTLTWQHLPDYLAQKLA
AGPLTVDPLNTQLLNEEQPLGEEAKTGQHSASHPLAGKVVSGKVTRGNTATLPTTTAVQS
DSLHEAIYSNVLQAHQACNGNVSQCAKRLGISRNALYRRLKQMGLKG
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacagttaaaccgcatttaccatcgacacaggcgtggttggccgattcgtggcagcgc
agcattggcgctggcttgtccgagtttcagttaccccaagaacttaggctcgatgctagc
gaactaaagcagaaacatgagcaatatcaaatgctcatagcattagtagaatctcatgcc
ttgcccttgtttaatcagttgatggcgcattctaatagccgactcttgctcagtgatgct
gagggttatgtgctcaggcactggggcgtgagccgttactccacaaaactggcggatgtg
gctctggatattggggtgaattggcttgagcaacacaagggcaccaatgcgatagggacg
gcgctcaccgccaaacaagcggtatctgtggtgggtgagcagcattttattcgtcagaat
cgttttatgagttgcactgcttgcccaatattttctcctcaaggtgaaatgctcggggtg
atagatatcaccagtgagcagcaaaggcacacccagcagacgctgatgttagtgtcgagt
ttggcgcagcaggtcgagaccgcgcttttgtgtcatctgcctgatagccattatcgaatc
gatttagcggcgcagcccaatctgctcagttcgggttggcagggtatagtgatagccgat
agcgatggccgcatcgttgggtataatcccatggctaaacaattgcttaatcaagctaag
gtgggtgatagcgtagagcagtacttaggcgataattggagccgtgcgggtggttttaat
caacatttagacttgcatctacagactcaatccttaaatattcccagcgccaagagtcgg
gtggcgatgagcaataaatcgctcaatcaattgggtgtgcggtttcacgatcctcaactt
gagcgcgcatggcaacatgccaataaggtgatcactaagcaaattccgctgttagtgctc
ggtgaaaccggcgtcggtaaagagcagtttgttaaaaagctccacgcccatagtgtgcgg
cgcagcgagcccttagtggcggtgaactgtgcggcattgcctgcagagttagtcgaatct
gaactctttggttatcaggcgggcgcgtttactggggcaaaccgcactggatttatcggc
aaaattcgccaagcccacggcggttttttgtttttagatgaaataggtgaaatgccgctg
gcggcacagagtcgtttactcagggtattgcaggagcgcgaagtggtgcccgttggcagt
aatcaaagttttaaagtcgatatccaaatcattgccgcgacccatatggatttagagcaa
caagtggcgcaggggctgtttcggcaggatttattctatcggttaaatggcttgcaagtg
cggttacctgcactgcgcgagcggcaggatatcgagcgcattatccataaattgcatcgt
aaacatcgcattgcgccgcaggcgatctgccctgaactgttagggctactggtgcaacac
gactggccgggcaacttgcgtgagctggataatcttatgcaagtcgcttgcttgatggct
gaaggagatgacaccctaacttggcagcatttacccgattatcttgcacaaaaattagcg
gcagggccgttaacagtggatccgttaaacacacagctgttaaatgaagagcagccgtta
ggtgaagaggctaaaaccggtcaacattcggcatcacatccgctggctggcaaagttgta
agtggcaaagttacgcgtggcaacactgcgacgctgccaactaccactgcggtgcaatcg
gattctctccacgaggcgatttatagcaatgtgctacaggcacaccaagcctgtaatggc
aatgtgagccaatgcgccaagcgtttggggatcagccgtaatgccttgtatcgtcgatta
aaacagatgggacttaagggttaa
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