Shewanella sp. Pdp11: AYJ58_02190
Help
Entry
AYJ58_02190 CDS
T11329
Name
(GenBank) mechanosensitive ion channel protein MscS
KO
K16053
miniconductance mechanosensitive channel
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shep02000
]
AYJ58_02190
Transporters [BR:
shep02000
]
Other transporters
Pores ion channels [TC:
1
]
AYJ58_02190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MS_channel_2nd
MS_channel_3rd
Motif
Other DBs
NCBI-ProteinID:
AUD58366
LinkDB
All DBs
Position
complement(471652..472920)
Genome browser
AA seq
422 aa
AA seq
DB search
MDQEIRLEISAWLAGFGIDSQPSDGISTSIMIIACLLLAGIAYLIVRRVVIRAVNMVILR
SKVTWDDVFMRYKVLEKLAMLVPAIVLNLLVPIALTEHQILSNLIDRLLSIWLVVLMIRA
IYAGLDAVDEISDVNLVSRRLPVKSFVQLTKLFLFFVGIIVSISILADQSPVYFLSGLGV
ATGFVMLVFRDTILGFVAGIQLAANRMVSKGDWIQMDKYGADGAVEEVSLTTVKVRNWDK
TITMIPAYALVSDAFRNWRGMSESGGRRIKRAVNIDINSIKFLSEEEHERLSKINCLKEY
FPAKINEIREANARVSDLDMKVNGRHLTNVGTFRAYLQEYLQRHDKVHKDMTLMVRQLAP
TTEGLPIEIYIFTNDTRWAFYEAIQADIFDHVFAILPEFGLQAFQAPTGNDIRSLKSVKV
EG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
gtggatcaggaaataagactcgaaatttcggcatggttagcgggctttgggattgatagc
caaccctcggacggcatatcaaccagcataatgatcattgcctgcttactgctggcgggt
atcgcttatctcattgttcgacgtgtagtcatacgcgctgtcaacatggtgatcctgcgc
tccaaagtcacctgggacgatgtgtttatgcgttacaaagtgctcgaaaagctggccatg
ctagtgcctgcaatcgtgctcaatctattagtacccatcgccttaaccgaacatcaaatc
ttaagtaatttaatcgaccggttgctgagtatttggctggtggtgctgatgatccgcgct
atttatgcgggtttagatgcggtcgatgaaatttcagatgtcaatctggtgagccgacgt
ttacccgttaaaagctttgtgcagttaactaagctgtttttattctttgtcggcattatc
gtttctatctccatcttggccgatcagtcccctgtgtacttccttagcggcttaggtgtg
gcgacgggttttgtgatgttagtgttccgcgacactattttaggttttgtggcgggtatt
cagttagcagcaaaccgcatggtgagcaagggcgactggatccagatggacaaatatggc
gccgacggtgcggtagaagaagtctcgctgaccacagttaaagtgcgtaactgggataaa
accatcactatgatccccgcctatgccttagtgtcggatgcgtttcgcaactggcgtggt
atgtctgagtcgggtgggcgtaggattaaacgcgctgttaatatcgacattaacagcatt
aagtttttgagcgaggaagagcacgaacgtctcagtaagatcaattgcttaaaagaatat
ttccctgccaaaatcaacgaaatccgcgaggcgaatgccagagtctctgatcttgatatg
aaagtgaatggtcgccatttgactaacgtcggcaccttccgcgcttacctgcaggaatac
ctacagcgtcacgataaagtgcacaaggacatgaccctaatggtgcgtcagctcgcgcca
accacagagggtctaccgatcgagatttatatcttcactaacgatactcgctgggcattt
tatgaagcgatacaagcagatatcttcgaccatgtttttgcaatattgcctgagtttggt
ctgcaggctttccaagcgccaacgggtaacgatattcgcagcttaaaatcggtgaaggtc
gagggttag
DBGET
integrated database retrieval system
