Shewanella sp. Pdp11: AYJ58_02975
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Entry
AYJ58_02975 CDS
T11329
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03030
DNA replication
shep03410
Base excision repair
shep03420
Nucleotide excision repair
shep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYJ58_02975
03410 Base excision repair
AYJ58_02975
03420 Nucleotide excision repair
AYJ58_02975
03440 Homologous recombination
AYJ58_02975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shep03032
]
AYJ58_02975
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_02975
Enzymes [BR:
shep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AYJ58_02975
DNA replication proteins [BR:
shep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AYJ58_02975
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
AYJ58_02975
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYJ58_02975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
AUD58505
LinkDB
All DBs
Position
complement(650118..652883)
Genome browser
AA seq
921 aa
AA seq
DB search
MPTVAKNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLTRYQPSHIAV
VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGT
IARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLL
ALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA
DMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEVLDNKITANT
SIDAASETQEDSTPVEAIATQYDCILTEAELDAWIAKLKQADLMAVDTETTSLDYMVAEL
VGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISIL
ANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQ
IPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLID
SMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS
TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR
LSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFA
EGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYI
DTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRYAMRRQGAERAAINAPM
QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA
ADLDVELLAEAGIGNNWDEAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccgtcgctaaaaacccacttgtgcttgtggatggatcttcttatttatatcgc
gcttattatgcgcctcctcacctgacaaactcaaagggcgaagcaaccggtgccgtttat
ggcgtagtgaatatgttacgcagcttgctgactcgctatcagccaagccatatcgcagtc
gtgttcgatgccaagggcaaaaccttccgcaatgacatgtacagcgaatacaaagcacag
cgcccacctatgcctgatgacctacgttcgcaaatcgaacctctacatcgcattattcgt
gcactgggtttaccactgatttcgatttccggcgtcgaagccgatgacgtgatcggcact
attgctcgccaagccagtttagaaaaccgtgcagtgcttatcagcactggcgataaagac
atggcgcagttagtcgatgagaacgtcacgctcatcaacaccatgacagacaccataatg
ggcccagaagaagtcgcgattaaatttggtgttggtccagaccgtatcatagatttgctc
gcgctgatgggcgacaaggccgacaacattcccggcttacccggcgttggtgagaaaaca
gcgctcgctatgctcacaggagccggcagcgtgagtaacttattagctgaacccgaaaaa
gtcgccgagctcggctttagaggttctaaaaccatggcggcgaagatcattgaaaatgcc
gacatgctcaagctttcttacgaactcgccaccatcaaaaccgatgtcgaacttgagcaa
gactggcacgaactcaccatcaagcccgcggacaaagatgaactgatcaaatgctacggc
gagatggaatttaagcgttggttagccgaagtcttagataacaaaatcactgcaaatacc
tcaattgatgcggcatccgagacacaagaagactcaactccagtcgaagcgattgcaacg
cagtacgactgcattctcacggaagccgaattagacgcttggattgctaagcttaagcaa
gccgacttgatggcggtagacactgaaaccaccagcttagattacatggtggcagaatta
gtcgggatatctttcgccgttgaggcaggaaaagccgcttatctgcctttgacccatgat
tatgttggcgcaccgactcaaatcgataaaaccgtcgcgctagaaaaactgcgtccactg
cttgaagatccaaaacttaagaaagtcggtcaaaatcttaagtacgacatcagtatctta
gccaatgcaggcatcaaattgcagggcgtcgctttcgacactatgctcgaatcctatgtc
ttcaactcagtagcttcgcgccatgatatggatggcttagccctcaagtacttaggccat
aagaatatcagctttgaagaaatcgccggtaaaggtgcaaaacagctgaccttcaaccaa
attccactggaaacggctgcgccttatgcggccgaagatgccgacatcaccctgcgttta
caccaacatttgtggccaagacttgaaaaagaagcggaactggccgctatgtttaccgaa
gtcgaattgccgctgatccaagtattgtcggatattgaacgccaaggggtattaatcgac
agcatgttactcggccaacaaagcgacgagctggcgcgtaaaatcgataccttagaagaa
aaagcctacgacattgccggtgagaaatttaaccttggctcgcctaagcaactgcaagta
ctgttttttgaaaagctaggttacccgatcaccaaaaagacccccaagggcgcaccatcg
accgcggaagaagtgttggtcgaattggcgttagatttccctctgccaaaggtgatcctc
gaacatcgcagcctatctaaattaaagagcacttatacagataaactgccactgatggtt
aacgctaaaacgggtcgcgtacacactagctatcatcaagctaatgctgcgacggggcgc
ttatcatcgagcgagcctaacctgcaaaatattcctatccgcaccgaggaaggccgtcgc
atacgccaagccttcatcgcccccgcaggtcgtaaaattttggccgccgactactcacaa
atcgaactgcggatcatggcgcatttatcccaagatgccggcttactcaaagccttcgcc
gagggcaaagacattcacagagctacggctgccgaagtgtttggcactgactttgatgaa
gtaaccacagaacagcgtcgccgcgccaaagcggttaacttcggcttaatttacggcatg
tcagcctttggtttagcacgccagctcgatatcccgcgccatgaagcacaaacctatatc
gacacctactttgcccgttatccaggcgtattacgttatatggaagaaacgcgtgcgggt
gctgctgacttaggttacgtatcgactctgtttggtcgtcgtctctacttacccgaaatc
cgtgatcgttacgcgatgcgccgccaaggtgctgaacgtgctgcgattaacgcgccaatg
caaggcacggctgccgacatcatcaaaaaggccatgatcaatattgcccagtggatcaag
acagaaacccaaggcgaaatcactatgatcatgcaggttcacgatgaattggtgtttgaa
gtcgatgcggataaagctgaagcgcttaaaaagacaatctgcactttaatggcacaagcc
gccgatctcgatgttgaactacttgccgaagcgggcattggtaataactgggatgaagcc
cactaa
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